Project measure / variable:   Vinyard1   condyle_height

ID, description, units MPD:30407   condyle_height   height of the condyle above the molar tooth row   [mm]  
Data set, strains Vinyard1   inbred   21 strains     sex: both     age: 9-12wks
Procedure bone dimensions
Ontology mappings

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  STRAIN COMPARISON PLOT
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Vinyard1 - height of the condyle above the molar tooth row



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested21 strains21 strains
Mean of the strain means2.08   mm 2.08   mm
Median of the strain means2.09   mm 2.10   mm
SD of the strain means± 0.233 ± 0.227
Coefficient of variation (CV)0.112 0.109
Min–max range of strain means1.56   –   2.55   mm 1.48   –   2.50   mm
Mean sample size per strain9.9   mice 9.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0005 0.0005 0.0092 0.9237
strain 20 18.571 0.9286 18.0614 < 0.0001
sex:strain 20 1.301 0.065 1.2653 0.1988
Residuals 372 19.1248 0.0514


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1.98 0.227   10 0.0717 0.115 1.68, 2.46 -0.43
129S1/SvImJ m 2.18 0.148   10 0.0469 0.068 2.01, 2.38 0.45
A/J f 1.79 0.154   10 0.0485 0.0857 1.47, 1.98 -1.25
A/J m 1.79 0.427   10 0.135 0.239 0.85, 2.51 -1.27
AKR/J f 2.24 0.132   9 0.0441 0.0591 2.03, 2.41 0.68
AKR/J m 2.17 0.248   10 0.0785 0.114 1.81, 2.61 0.41
BALB/cByJ f 2.38 0.254   10 0.0802 0.106 1.82, 2.7 1.29
BALB/cByJ m 2.21 0.15   10 0.0476 0.0681 1.92, 2.41 0.59
BTBR T+ Itpr3tf/J f 2.15 0.22   10 0.0697 0.102 1.75, 2.48 0.3
BTBR T+ Itpr3tf/J m 2.1 0.219   10 0.0693 0.104 1.69, 2.43 0.1
C3H/HeJ f 2.13 0.183   10 0.058 0.0863 1.86, 2.45 0.21
C3H/HeJ m 2.25 0.0964   10 0.0305 0.0428 2.13, 2.4 0.76
C57BL/10J f 2.08 0.282   10 0.0892 0.136 1.78, 2.53 0.0
C57BL/10J m 1.94 0.196   10 0.0621 0.101 1.72, 2.3 -0.61
C57BL/6J f 1.77 0.168   10 0.053 0.0948 1.53, 2.02 -1.34
C57BL/6J m 1.78 0.155   9 0.0518 0.0875 1.45, 1.99 -1.31
C57BLKS/J f 2.05 0.19   10 0.06 0.0928 1.72, 2.29 -0.13
C57BLKS/J m 2.08 0.178   10 0.0564 0.0859 1.81, 2.41 0.01
C57L/J f 2.2 0.184   10 0.0583 0.0838 1.89, 2.47 0.51
C57L/J m 2.26 0.273   10 0.0863 0.121 1.67, 2.57 0.81
C58/J f 1.56 0.219   8 0.0775 0.14 1.09, 1.81 -2.24
C58/J m 1.48 0.152   8 0.0536 0.103 1.18, 1.69 -2.63
CAST/EiJ f 1.84 0.127   10 0.0402 0.0692 1.64, 2.06 -1.04
CAST/EiJ m 1.91 0.28   10 0.0887 0.147 1.5, 2.34 -0.74
CBA/J f 2.15 0.171   10 0.0541 0.0797 1.78, 2.35 0.3
CBA/J m 2.21 0.222   10 0.0702 0.1 1.83, 2.67 0.59
DBA/2J f 2.55 0.217   10 0.0687 0.0851 2.32, 2.97 2.02
DBA/2J m 2.5 0.339   10 0.107 0.136 1.73, 2.91 1.87
FVB/NJ f 2.09 0.118   10 0.0373 0.0564 1.87, 2.31 0.04
FVB/NJ m 2.1 0.119   10 0.0377 0.0568 1.91, 2.26 0.1
NOD/ShiLtJ f 2.37 0.273   10 0.0864 0.115 1.97, 2.84 1.24
NOD/ShiLtJ m 2.37 0.297   10 0.094 0.126 1.85, 2.76 1.29
NON/ShiLtJ f 1.97 0.282   11 0.0849 0.143 1.46, 2.54 -0.48
NON/ShiLtJ m 1.89 0.122   10 0.0385 0.0644 1.76, 2.12 -0.83
NZB/BlNJ f 1.92 0.322   10 0.102 0.168 1.49, 2.68 -0.69
NZB/BlNJ m 2.2 0.199   10 0.0629 0.0903 1.94, 2.51 0.54
PL/J f 2.35 0.311   10 0.0983 0.132 1.92, 3.02 1.16
PL/J m 2.18 0.243   9 0.0811 0.111 1.76, 2.6 0.45
RIIIS/J f 2.11 0.208   10 0.0659 0.0986 1.72, 2.44 0.12
RIIIS/J m 2.0 0.256   10 0.0811 0.128 1.72, 2.44 -0.34
SJL/J f 2.02 0.165   10 0.0522 0.0816 1.71, 2.26 -0.26
SJL/J m 2.02 0.29   10 0.0917 0.144 1.6, 2.67 -0.25


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1.98 0.0717 2.121 1.839
129S1/SvImJ m 2.183 0.0717 2.324 2.042
A/J f 1.791 0.0717 1.932 1.65
A/J m 1.787 0.0717 1.928 1.646
AKR/J f 2.2389 0.0756 2.3875 2.0903
AKR/J m 2.17 0.0717 2.311 2.029
BALB/cByJ f 2.381 0.0717 2.522 2.24
BALB/cByJ m 2.21 0.0717 2.351 2.069
BTBR T+ Itpr3tf/J f 2.154 0.0717 2.295 2.013
BTBR T+ Itpr3tf/J m 2.1 0.0717 2.241 1.959
C3H/HeJ f 2.126 0.0717 2.267 1.985
C3H/HeJ m 2.253 0.0717 2.394 2.112
C57BL/10J f 2.081 0.0717 2.222 1.94
C57BL/10J m 1.942 0.0717 2.083 1.801
C57BL/6J f 1.768 0.0717 1.909 1.627
C57BL/6J m 1.7756 0.0756 1.9242 1.6269
C57BLKS/J f 2.046 0.0717 2.187 1.905
C57BLKS/J m 2.076 0.0717 2.217 1.935
C57L/J f 2.198 0.0717 2.339 2.057
C57L/J m 2.257 0.0717 2.398 2.116
C58/J f 1.5613 0.0802 1.7189 1.4036
C58/J m 1.4763 0.0802 1.6339 1.3186
CAST/EiJ f 1.839 0.0717 1.98 1.698
CAST/EiJ m 1.906 0.0717 2.047 1.765
CBA/J f 2.145 0.0717 2.286 2.004
CBA/J m 2.21 0.0717 2.351 2.069
DBA/2J f 2.554 0.0717 2.695 2.413
DBA/2J m 2.5 0.0717 2.641 2.359
FVB/NJ f 2.092 0.0717 2.233 1.951
FVB/NJ m 2.097 0.0717 2.238 1.956
NOD/ShiLtJ f 2.371 0.0717 2.512 2.23
NOD/ShiLtJ m 2.367 0.0717 2.508 2.226
NON/ShiLtJ f 1.9664 0.0684 2.1008 1.8319
NON/ShiLtJ m 1.889 0.0717 2.03 1.748
NZB/BlNJ f 1.923 0.0717 2.064 1.782
NZB/BlNJ m 2.202 0.0717 2.343 2.061
PL/J f 2.355 0.0717 2.496 2.214
PL/J m 2.1833 0.0756 2.332 2.0347
RIIIS/J f 2.113 0.0717 2.254 1.972
RIIIS/J m 1.998 0.0717 2.139 1.857
SJL/J f 2.024 0.0717 2.165 1.883
SJL/J m 2.016 0.0717 2.157 1.875


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 2.0815 0.0507 2.1812 1.9818
A/J both 1.789 0.0507 1.8887 1.6893
AKR/J both 2.2044 0.0521 2.3069 2.102
BALB/cByJ both 2.2955 0.0507 2.3952 2.1958
BTBR T+ Itpr3tf/J both 2.127 0.0507 2.2267 2.0273
C3H/HeJ both 2.1895 0.0507 2.2892 2.0898
C57BL/10J both 2.0115 0.0507 2.1112 1.9118
C57BL/6J both 1.7718 0.0521 1.8742 1.6694
C57BLKS/J both 2.061 0.0507 2.1607 1.9613
C57L/J both 2.2275 0.0507 2.3272 2.1278
C58/J both 1.5188 0.0567 1.6302 1.4073
CAST/EiJ both 1.8725 0.0507 1.9722 1.7728
CBA/J both 2.1775 0.0507 2.2772 2.0778
DBA/2J both 2.527 0.0507 2.6267 2.4273
FVB/NJ both 2.0945 0.0507 2.1942 1.9948
NOD/ShiLtJ both 2.369 0.0507 2.4687 2.2693
NON/ShiLtJ both 1.9277 0.0495 2.0251 1.8303
NZB/BlNJ both 2.0625 0.0507 2.1622 1.9628
PL/J both 2.2692 0.0521 2.3716 2.1667
RIIIS/J both 2.0555 0.0507 2.1552 1.9558
SJL/J both 2.02 0.0507 2.1197 1.9203




  GWAS USING LINEAR MIXED MODELS