Phenotype measure:   Iraqi1   control_bone_vol

ID, description, units MPD:49501   control_bone_vol   bone volume of the maxillary jaw (x 10-3), uninfected   [mm3]
P.gingivalis and F.nucleatum study
Data set, strains Iraqi1   CC pre   21 strains     sex: both     age: 8wks
Procedure computed tomography
Ontology mappings

  STRAIN COMPARISON PLOT
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Iraqi1 - bone volume of the maxillary jaw (x 10-3), uninfected



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested20 strains21 strains
Mean of the strain means6.93   mm3 6.77   mm3
Median of the strain means6.40   mm3 6.34   mm3
SD of the strain means± 2.38 ± 2.28
Coefficient of variation (CV)0.343 0.336
Min–max range of strain means3.75   –   12.0   mm3 2.90   –   12.2   mm3
Mean sample size per strain2.9   mice 4.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2.2055 2.2055 0.8509 0.3599
strain 9 205.2066 22.8007 8.7965 < 0.0001
sex:strain 9 19.0392 2.1155 0.8161 0.6034
Residuals 61 158.1142 2.592


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 6.96 1.37   5 0.614 0.197 5.6, 8.8 0.01
A/J m 7.32 1.11   5 0.494 0.151 6.1, 8.5 0.24
BALB/cJ f 5.98 0.466   5 0.208 0.0779 5.3, 6.5 -0.4
BALB/cJ m 6.56 1.34   5 0.599 0.204 5.4, 8.5 -0.09
C57BL/6J f 3.75 0.443   4 0.222 0.118 3.4, 4.4 -1.34
C57BL/6J m 5.5 1.83   5 0.82 0.333 4.3, 8.7 -0.56
DBA/2J f 7.53 1.52   3 0.876 0.201 5.9, 8.9 0.25
DBA/2J m 6.53 0.499   4 0.25 0.0765 6.0, 7.2 -0.11
PreCC026/Tau f 9.2 0.566   2   0.4 0.0615 8.8, 9.6 0.95
PreCC026/Tau m 12.2 1.06   2   0.75 0.0873 11.4, 12.9 2.39
PreCC030/Tau f 5.55 1.34   2   0.95 0.242 4.6, 6.5 -0.58
PreCC030/Tau m 7.55 3.68   6 1.5 0.487 4.8, 13.5 0.34
PreCC034/Tau f 3.85 1.06   2   0.75 0.275 3.1, 4.6 -1.3
PreCC034/Tau m 3.35 1.26   8 0.445 0.376 2.3, 6.1 -1.5
PreCC057/Tau f 11.1 3.26   3 1.88 0.294 8.0, 14.5 1.75
PreCC072/Tau f 10.5 0.0   1   0.0 0.0 10.5, 10.5 1.5
PreCC072/Tau m 5.89 2.64   11 0.797 0.449 3.2, 12.4 -0.39
PreCC111/Tau m 6.34 2.35   8 0.832 0.371 4.2, 9.7 -0.19
PreCC114/Tau f 8.1 0.898   4 0.449 0.111 7.2, 9.1 0.49
PreCC114/Tau m 7.5 0.0   1   0.0 0.0 7.5, 7.5 0.32
PreCC182/Tau f 6.8 0.0   1   0.0 0.0 6.8, 6.8 -0.05
PreCC182/Tau m 11.7 0.377   4 0.189 0.0323 11.3, 12.2 2.17
PreCC188/Tau f 4.83 0.764   3 0.441 0.158 4.0, 5.5 -0.88
PreCC188/Tau m 6.35 0.212   2   0.15 0.0334 6.2, 6.5 -0.19
PreCC196/Tau f 12.0 0.0   1   0.0 0.0 12.0, 12.0 2.13
PreCC196/Tau m 10.5 3.02   4 1.51 0.287 6.4, 13.6 1.64
PreCC211/Tau f 5.88 1.75   4 0.874 0.298 3.5, 7.5 -0.44
PreCC219/Tau f 5.5 0.141   2   0.1 0.0257 5.4, 5.6 -0.6
PreCC219/Tau m 5.7 1.57   3 0.907 0.276 4.0, 7.1 -0.47
PreCC521/Tau f 6.7 0.0   1   0.0 0.0 6.7, 6.7 -0.1
PreCC521/Tau m 5.75 0.898   6 0.367 0.156 4.3, 6.7 -0.45
PreCC530/Tau m 5.57 0.907   4 0.453 0.163 4.7, 6.5 -0.53
PreCC534/Tau m 6.0 1.67   3 0.964 0.278 4.2, 7.5 -0.34
PreCC551/Tau f 3.88 0.798   5 0.357 0.206 2.9, 4.8 -1.28
PreCC551/Tau m 2.9 0.0   1   0.0 0.0 2.9, 2.9 -1.7
PreCC643/Tau f 5.7 0.0   1   0.0 0.0 5.7, 5.7 -0.52
PreCC643/Tau m 6.18 3.36   4 1.68 0.544 2.3, 10.5 -0.26
PreCC696/Tau f 8.7 2.11   5 0.942 0.242 5.3, 10.6 0.74
PreCC696/Tau m 6.3 0.0   1   0.0 0.0 6.3, 6.3 -0.21
PreCC711/Tau f 6.1 1.7   7 0.644 0.279 3.9, 8.2 -0.35
PreCC711/Tau m 6.52 1.52   6 0.62 0.233 3.8, 7.9 -0.11


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 6.96 0.72 8.3997 5.5203
A/J m 7.32 0.72 8.7597 5.8803
BALB/cJ f 5.98 0.72 7.4197 4.5403
BALB/cJ m 6.56 0.72 7.9997 5.1203
C57BL/6J f 3.75 0.805 5.3597 2.1403
C57BL/6J m 5.5 0.72 6.9397 4.0603
DBA/2J f 7.5333 0.9295 9.392 5.6746
DBA/2J m 6.525 0.805 8.1347 4.9153
PreCC026/Tau f 9.2 1.1384 11.4764 6.9236
PreCC026/Tau m 12.15 1.1384 14.4264 9.8736
PreCC030/Tau f 5.55 1.1384 7.8264 3.2736
PreCC030/Tau m 7.55 0.6573 8.8643 6.2357
PreCC034/Tau f 3.85 1.1384 6.1264 1.5736
PreCC034/Tau m 3.35 0.5692 4.4882 2.2118
PreCC188/Tau f 4.8333 0.9295 6.692 2.9746
PreCC188/Tau m 6.35 1.1384 8.6264 4.0736
PreCC219/Tau f 5.5 1.1384 7.7764 3.2236
PreCC219/Tau m 5.7 0.9295 7.5587 3.8413
PreCC711/Tau f 6.1 0.6085 7.3168 4.8832
PreCC711/Tau m 6.5167 0.6573 7.831 5.2024


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 7.14 0.5091 8.158 6.122
BALB/cJ both 6.27 0.5091 7.288 5.252
C57BL/6J both 4.625 0.54 5.7048 3.5452
DBA/2J both 7.0292 0.6148 8.2586 5.7998
PreCC026/Tau both 10.675 0.805 12.2847 9.0653
PreCC030/Tau both 6.55 0.6573 7.8643 5.2357
PreCC034/Tau both 3.6 0.6364 4.8726 2.3274
PreCC188/Tau both 5.5917 0.7349 7.0611 4.1222
PreCC219/Tau both 5.6 0.7349 7.0694 4.1306
PreCC711/Tau both 6.3083 0.4479 7.2039 5.4128




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA