Phenotype measure:   Vinyard1   max_gape

ID, description, units MPD:30401   max_gape   distance between upper and lower incisor tips at maximum passive jaw opening (maximum gape)   [mm]
Data set, strains Vinyard1   inbred   21 strains     sex: both     age: 9-12wks
Procedure bone dimensions
Ontology mappings

  STRAIN COMPARISON PLOT
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Vinyard1 - distance between upper and lower incisor tips at maximum passive jaw opening (maximum gape)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested21 strains21 strains
Mean of the strain means13.7   mm 14.0   mm
Median of the strain means13.5   mm 14.0   mm
SD of the strain means± 0.815 ± 0.866
Coefficient of variation (CV)0.0594 0.0618
Min–max range of strain means12.6   –   15.4   mm 12.6   –   16.4   mm
Mean sample size per strain9.9   mice 9.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 9.3868 9.3868 46.1936 < 0.0001
strain 20 251.7598 12.588 61.947 < 0.0001
sex:strain 20 29.8818 1.4941 7.3526 < 0.0001
Residuals 371 75.3894 0.2032


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 13.0 0.216   10 0.0684 0.0167 12.7, 13.3 -0.88
129S1/SvImJ m 14.0 0.455   10 0.144 0.0326 13.4, 14.7 -0.03
A/J f 14.3 0.456   10 0.144 0.0319 13.4, 15.0 0.71
A/J m 13.7 0.585   10 0.185 0.0429 12.7, 14.3 -0.37
AKR/J f 14.3 0.287   10 0.0907 0.0201 13.8, 14.7 0.71
AKR/J m 14.5 0.578   10 0.183 0.0399 13.5, 15.6 0.55
BALB/cByJ f 13.6 0.367   10 0.116 0.027 13.0, 14.1 -0.15
BALB/cByJ m 14.7 0.514   10 0.162 0.035 13.8, 15.3 0.78
BTBR T+ Itpr3tf/J f 15.4 0.504   10 0.159 0.0326 14.8, 16.2 2.06
BTBR T+ Itpr3tf/J m 16.4 0.418   10 0.132 0.0255 15.6, 17.1 2.74
C3H/HeJ f 13.4 0.519   10 0.164 0.0387 12.7, 14.4 -0.39
C3H/HeJ m 13.8 0.231   10 0.0731 0.0168 13.5, 14.2 -0.26
C57BL/10J f 13.4 0.36   10 0.114 0.0269 12.9, 13.9 -0.39
C57BL/10J m 13.7 0.527   10 0.167 0.0385 12.9, 14.5 -0.37
C57BL/6J f 14.0 0.75   10 0.237 0.0535 12.9, 15.1 0.34
C57BL/6J m 14.4 0.403   9 0.134 0.0279 13.9, 15.0 0.43
C57BLKS/J f 12.6 0.686   10 0.217 0.0545 11.8, 13.8 -1.37
C57BLKS/J m 13.6 0.305   10 0.0964 0.0224 13.1, 14.3 -0.49
C57L/J f 13.6 0.536   10 0.169 0.0393 13.0, 14.6 -0.15
C57L/J m 14.4 0.346   10 0.109 0.024 14.1, 15.2 0.43
C58/J f 14.3 0.663   8 0.234 0.0464 13.6, 15.5 0.71
C58/J m 14.6 0.459   8 0.162 0.0315 13.9, 15.3 0.67
CAST/EiJ f 12.9 0.38   9 0.127 0.0295 12.3, 13.3 -1.01
CAST/EiJ m 12.7 0.406   10 0.128 0.0319 12.0, 13.4 -1.53
CBA/J f 13.5 0.62   10 0.196 0.046 12.7, 14.6 -0.27
CBA/J m 14.4 0.355   10 0.112 0.0247 13.9, 14.8 0.43
DBA/2J f 13.0 0.524   10 0.166 0.0403 12.4, 13.9 -0.88
DBA/2J m 12.6 0.413   10 0.131 0.0328 12.1, 13.5 -1.64
FVB/NJ f 14.5 0.337   10 0.107 0.0233 14.0, 15.1 0.96
FVB/NJ m 14.5 0.38   10 0.12 0.0262 14.1, 15.5 0.55
NOD/ShiLtJ f 15.1 0.412   10 0.13 0.0273 14.4, 15.8 1.7
NOD/ShiLtJ m 15.1 0.262   10 0.0827 0.0173 14.6, 15.5 1.24
NON/ShiLtJ f 13.2 0.298   11 0.0899 0.0226 12.7, 13.7 -0.64
NON/ShiLtJ m 13.6 0.301   10 0.0952 0.0222 13.0, 14.0 -0.49
NZB/BlNJ f 15.0 0.643   10 0.203 0.0428 14.2, 16.0 1.57
NZB/BlNJ m 14.1 0.523   10 0.165 0.0372 13.5, 15.4 0.09
PL/J f 12.9 0.355   10 0.112 0.0276 12.4, 13.3 -1.01
PL/J m 13.2 0.291   9 0.0969 0.022 12.8, 13.6 -0.95
RIIIS/J f 13.3 0.466   9 0.155 0.0351 12.5, 14.1 -0.51
RIIIS/J m 13.6 0.409   10 0.129 0.0302 13.0, 14.1 -0.49
SJL/J f 12.8 0.311   10 0.0983 0.0243 12.4, 13.4 -1.13
SJL/J m 12.9 0.371   10 0.117 0.0288 12.2, 13.6 -1.3


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 12.97 0.1426 13.2503 12.6897
129S1/SvImJ m 13.97 0.1426 14.2503 13.6897
A/J f 14.29 0.1426 14.5703 14.0097
A/J m 13.65 0.1426 13.9303 13.3697
AKR/J f 14.3 0.1426 14.5803 14.0197
AKR/J m 14.49 0.1426 14.7703 14.2097
BALB/cByJ f 13.59 0.1426 13.8703 13.3097
BALB/cByJ m 14.68 0.1426 14.9603 14.3997
BTBR T+ Itpr3tf/J f 15.45 0.1426 15.7303 15.1697
BTBR T+ Itpr3tf/J m 16.39 0.1426 16.6703 16.1097
C3H/HeJ f 13.4 0.1426 13.6803 13.1197
C3H/HeJ m 13.77 0.1426 14.0503 13.4897
C57BL/10J f 13.39 0.1426 13.6703 13.1097
C57BL/10J m 13.7 0.1426 13.9803 13.4197
C57BL/6J f 14.02 0.1426 14.3003 13.7397
C57BL/6J m 14.4444 0.1503 14.7399 14.149
C57BLKS/J f 12.6 0.1426 12.8803 12.3197
C57BLKS/J m 13.62 0.1426 13.9003 13.3397
C57L/J f 13.64 0.1426 13.9203 13.3597
C57L/J m 14.42 0.1426 14.7003 14.1397
C58/J f 14.275 0.1594 14.5884 13.9616
C58/J m 14.575 0.1594 14.8884 14.2616
CAST/EiJ f 12.8778 0.1503 13.1732 12.5823
CAST/EiJ m 12.74 0.1426 13.0203 12.4597
CBA/J f 13.47 0.1426 13.7503 13.1897
CBA/J m 14.38 0.1426 14.6603 14.0997
DBA/2J f 12.99 0.1426 13.2703 12.7097
DBA/2J m 12.58 0.1426 12.8603 12.2997
FVB/NJ f 14.47 0.1426 14.7503 14.1897
FVB/NJ m 14.53 0.1426 14.8103 14.2497
NOD/ShiLtJ f 15.06 0.1426 15.3403 14.7797
NOD/ShiLtJ m 15.12 0.1426 15.4003 14.8397
NON/ShiLtJ f 13.2091 0.1359 13.4764 12.9418
NON/ShiLtJ m 13.58 0.1426 13.8603 13.2997
NZB/BlNJ f 15.02 0.1426 15.3003 14.7397
NZB/BlNJ m 14.07 0.1426 14.3503 13.7897
PL/J f 12.88 0.1426 13.1603 12.5997
PL/J m 13.2222 0.1503 13.5177 12.9268
RIIIS/J f 13.3 0.1503 13.5955 13.0045
RIIIS/J m 13.55 0.1426 13.8303 13.2697
SJL/J f 12.81 0.1426 13.0903 12.5297
SJL/J m 12.9 0.1426 13.1803 12.6197


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 13.47 0.1008 13.6682 13.2718
A/J both 13.97 0.1008 14.1682 13.7718
AKR/J both 14.395 0.1008 14.5932 14.1968
BALB/cByJ both 14.135 0.1008 14.3332 13.9368
BTBR T+ Itpr3tf/J both 15.92 0.1008 16.1182 15.7218
C3H/HeJ both 13.585 0.1008 13.7832 13.3868
C57BL/10J both 13.545 0.1008 13.7432 13.3468
C57BL/6J both 14.2322 0.1036 14.4359 14.0286
C57BLKS/J both 13.11 0.1008 13.3082 12.9118
C57L/J both 14.03 0.1008 14.2282 13.8318
C58/J both 14.425 0.1127 14.6466 14.2034
CAST/EiJ both 12.8089 0.1036 13.0125 12.6052
CBA/J both 13.925 0.1008 14.1232 13.7268
DBA/2J both 12.785 0.1008 12.9832 12.5868
FVB/NJ both 14.5 0.1008 14.6982 14.3018
NOD/ShiLtJ both 15.09 0.1008 15.2882 14.8918
NON/ShiLtJ both 13.3945 0.0985 13.5882 13.2009
NZB/BlNJ both 14.545 0.1008 14.7432 14.3468
PL/J both 13.0511 0.1036 13.2548 12.8475
RIIIS/J both 13.425 0.1036 13.6286 13.2214
SJL/J both 12.855 0.1008 13.0532 12.6568




  GWAS USING LINEAR MIXED MODELS