Phenotype measure:   Iraqi1   residual_bone_vol

ID, description, units MPD:49502   residual_bone_vol   residual bone volume of the maxillary jaw (x 10-3), post-infection (peridontitis)   [mm3]
P.gingivalis and F.nucleatum study
Data set, strains Iraqi1   CC pre   23 strains     sex: both     age: 8wks
Procedure computed tomography
Ontology mappings

  STRAIN COMPARISON PLOT
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Iraqi1 - residual bone volume of the maxillary jaw (x 10-3), post-infection (peridontitis)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested21 strains23 strains
Mean of the strain means6.34   mm3 5.75   mm3
Median of the strain means5.85   mm3 6.02   mm3
SD of the strain means± 2.15 ± 1.56
Coefficient of variation (CV)0.338 0.272
Min–max range of strain means2.54   –   12.7   mm3 2.90   –   8.82   mm3
Mean sample size per strain3.0   mice 3.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2.6777 2.6777 1.8407 0.1792
strain 13 300.8708 23.1439 15.9099 < 0.0001
sex:strain 13 54.4285 4.1868 2.8782 0.0022
Residuals 70 101.828 1.4547


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 7.68 0.958   5 0.428 0.125 6.7, 8.8 0.62
A/J m 7.2 0.938   5 0.42 0.13 6.2, 8.6 0.93
BALB/cJ f 4.68 0.74   5 0.331 0.158 3.8, 5.4 -0.77
BALB/cJ m 4.38 0.655   4 0.328 0.15 3.4, 4.8 -0.87
C57BL/6J f 4.93 0.403   4 0.202 0.0819 4.6, 5.5 -0.66
C57BL/6J m 4.67 1.36   3 0.784 0.291 3.4, 6.1 -0.69
DBA/2J f 6.95 0.858   4 0.429 0.123 5.9, 7.7 0.28
DBA/2J m 6.64 0.55   5 0.246 0.0829 6.0, 7.5 0.57
PreCC026/Tau f 8.1 0.0   1   0.0 0.0 8.1, 8.1 0.82
PreCC026/Tau m 6.36 1.16   5 0.52 0.183 5.4, 8.1 0.39
PreCC030/Tau f 5.79 1.23   8 0.435 0.213 3.5, 7.1 -0.26
PreCC030/Tau m 6.8 0.0   1   0.0 0.0 6.8, 6.8 0.67
PreCC034/Tau m 3.45 0.915   4 0.457 0.265 2.1, 4.1 -1.47
PreCC057/Tau f 5.8 0.849   2   0.6 0.146 5.2, 6.4 -0.25
PreCC057/Tau m 6.87 1.3   3 0.751 0.19 5.6, 8.2 0.72
PreCC072/Tau f 6.88 1.64   5 0.735 0.239 4.4, 8.5 0.25
PreCC072/Tau m 2.92 1.26   6 0.513 0.431 1.2, 4.5 -1.81
PreCC111/Tau f 6.3 1.51   3 0.874 0.24 5.1, 8.0 -0.02
PreCC111/Tau m 5.3 0.3   3 0.173 0.0566 5.0, 5.6 -0.29
PreCC114/Tau f 12.7 1.7   2   1.2 0.134 11.5, 13.9 2.96
PreCC114/Tau m 8.82 0.995   4 0.497 0.113 8.0, 10.2 1.97
PreCC182/Tau m 6.02 1.44   5 0.642 0.239 4.8, 8.4 0.17
PreCC188/Tau f 5.8 1.23   3 0.709 0.212 4.9, 7.2 -0.25
PreCC188/Tau m 5.15 0.0707   2   0.05 0.0137 5.1, 5.2 -0.38
PreCC196/Tau f 8.2 0.0   1   0.0 0.0 8.2, 8.2 0.86
PreCC196/Tau m 8.53 1.82   3 1.05 0.213 6.5, 10.0 1.78
PreCC211/Tau f 7.5 0.0   1   0.0 0.0 7.5, 7.5 0.54
PreCC211/Tau m 5.1 2.82   5 1.26 0.554 3.1, 9.8 -0.41
PreCC219/Tau f 3.3 0.0   1   0.0 0.0 3.3, 3.3 -1.42
PreCC219/Tau m 4.75 0.843   4 0.421 0.177 4.2, 6.0 -0.64
PreCC521/Tau f 5.6 0.794   3 0.458 0.142 5.0, 6.5 -0.35
PreCC521/Tau m 5.35 0.636   2   0.45 0.119 4.9, 5.8 -0.25
PreCC530/Tau f 5.85 0.354   2   0.25 0.0604 5.6, 6.1 -0.23
PreCC530/Tau m 6.4 0.0   1   0.0 0.0 6.4, 6.4 0.42
PreCC534/Tau f 5.05 1.34   2   0.95 0.266 4.1, 6.0 -0.6
PreCC534/Tau m 6.05 2.47   2   1.75 0.409 4.3, 7.8 0.19
PreCC551/Tau f 2.54 0.932   5 0.417 0.367 0.9, 3.1 -1.77
PreCC551/Tau m 2.9 1.13   2   0.8 0.39 2.1, 3.7 -1.82
PreCC643/Tau f 5.9 0.0   1   0.0 0.0 5.9, 5.9 -0.21
PreCC643/Tau m 6.15 0.636   2   0.45 0.103 5.7, 6.6 0.26
PreCC696/Tau f 8.95 1.48   2   1.05 0.166 7.9, 10.0 1.21
PreCC696/Tau m 7.45 1.77   2   1.25 0.237 6.2, 8.7 1.09
PreCC711/Tau f 4.72 2.09   6 0.852 0.442 2.8, 8.5 -0.76
PreCC711/Tau m 4.92 1.37   4 0.687 0.279 3.6, 6.8 -0.53


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 7.68 0.5394 8.7558 6.6042
A/J m 7.2 0.5394 8.2758 6.1242
BALB/cJ f 4.68 0.5394 5.7558 3.6042
BALB/cJ m 4.375 0.6031 5.5777 3.1723
C57BL/6J f 4.925 0.6031 6.1277 3.7223
C57BL/6J m 4.6667 0.6963 6.0555 3.2779
DBA/2J f 6.95 0.6031 8.1527 5.7473
DBA/2J m 6.64 0.5394 7.7158 5.5642
PreCC057/Tau f 5.8 0.8528 7.5009 4.0991
PreCC057/Tau m 6.8667 0.6963 8.2555 5.4779
PreCC072/Tau f 6.88 0.5394 7.9558 5.8042
PreCC072/Tau m 2.9167 0.4924 3.8987 1.9346
PreCC111/Tau f 6.3 0.6963 7.6888 4.9112
PreCC111/Tau m 5.3 0.6963 6.6888 3.9112
PreCC114/Tau f 12.7 0.8528 14.4009 10.9991
PreCC114/Tau m 8.825 0.6031 10.0277 7.6223
PreCC188/Tau f 5.8 0.6963 7.1888 4.4112
PreCC188/Tau m 5.15 0.8528 6.8509 3.4491
PreCC521/Tau f 5.6 0.6963 6.9888 4.2112
PreCC521/Tau m 5.35 0.8528 7.0509 3.6491
PreCC534/Tau f 5.05 0.8528 6.7509 3.3491
PreCC534/Tau m 6.05 0.8528 7.7509 4.3491
PreCC551/Tau f 2.54 0.5394 3.6158 1.4642
PreCC551/Tau m 2.9 0.8528 4.6009 1.1991
PreCC696/Tau f 8.95 0.8528 10.6509 7.2491
PreCC696/Tau m 7.45 0.8528 9.1509 5.7491
PreCC711/Tau f 4.7167 0.4924 5.6987 3.7346
PreCC711/Tau m 4.925 0.6031 6.1277 3.7223


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 7.44 0.3814 8.2007 6.6793
BALB/cJ both 4.5275 0.4045 5.3343 3.7207
C57BL/6J both 4.7958 0.4606 5.7144 3.8772
DBA/2J both 6.795 0.4045 7.6018 5.9882
PreCC057/Tau both 6.3333 0.5505 7.4313 5.2354
PreCC072/Tau both 4.8983 0.3652 5.6266 4.17
PreCC111/Tau both 5.8 0.4924 6.782 4.818
PreCC114/Tau both 10.7625 0.5223 11.8041 9.7209
PreCC188/Tau both 5.475 0.5505 6.573 4.377
PreCC521/Tau both 5.475 0.5505 6.573 4.377
PreCC534/Tau both 5.55 0.6031 6.7527 4.3473
PreCC551/Tau both 2.72 0.5045 3.7263 1.7137
PreCC696/Tau both 8.2 0.6031 9.4027 6.9973
PreCC711/Tau both 4.8208 0.3893 5.5972 4.0445




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA