Phenotype measure:   Donahue1   upper_jaw

ID, description, units MPD:11523   upper_jaw   length of upper jaw   [mm]
Data set, strains Donahue1   inbred w/CC7   29 strains     sex: both     age: 15-16wks
Procedure DXA
Ontology mappings

  STRAIN COMPARISON PLOT
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Donahue1 - length of upper jaw



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested29 strains29 strains
Mean of the strain means16.2   mm 16.3   mm
Median of the strain means16.2   mm 16.4   mm
SD of the strain means± 0.782 ± 0.758
Coefficient of variation (CV)0.0484 0.0466
Min–max range of strain means14.4   –   17.6   mm 14.4   –   17.3   mm
Mean sample size per strain9.5   mice 9.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2.2549 2.2549 16.686 0.0001
strain 28 296.3557 10.5841 78.3217 < 0.0001
sex:strain 28 7.4707 0.2668 1.9744 0.0024
Residuals 485 65.5413 0.1351


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 16.4 0.406   10 0.128 0.0247 15.6, 17.0 0.29
129S1/SvImJ m 16.7 0.253   10 0.08 0.0152 16.2, 17.1 0.56
A/J f 16.2 0.207   10 0.0654 0.0127 16.0, 16.6 0.03
A/J m 16.6 0.318   8 0.113 0.0192 16.1, 17.1 0.43
AKR/J f 16.7 0.278   10 0.0879 0.0167 16.4, 17.2 0.67
AKR/J m 16.7 0.255   9 0.0852 0.0153 16.4, 17.1 0.56
BALB/cJ f 17.2 0.268   10 0.0847 0.0155 16.8, 17.6 1.31
BALB/cJ m 17.1 0.536   10 0.169 0.0313 15.8, 17.7 1.09
BTBR T+ Itpr3tf/J f 17.3 0.274   9 0.0913 0.0158 16.9, 17.7 1.44
BTBR T+ Itpr3tf/J m 17.3 0.336   10 0.106 0.0194 16.7, 17.8 1.36
BUB/BnJ f 16.4 0.343   9 0.114 0.0209 15.8, 16.9 0.29
BUB/BnJ m 16.5 0.3   8 0.106 0.0182 16.1, 16.9 0.3
C3H/HeJ f 15.6 0.83   10 0.263 0.0534 13.9, 16.7 -0.74
C3H/HeJ m 15.6 0.498   10 0.157 0.0319 14.7, 16.2 -0.89
C57BL/6J f 16.7 0.28   10 0.0885 0.0168 16.1, 16.9 0.67
C57BL/6J m 16.7 0.66   10 0.209 0.0394 15.1, 17.3 0.56
C57L/J f 17.2 0.451   10 0.143 0.0262 16.4, 17.9 1.31
C57L/J m 17.1 0.422   10 0.133 0.0247 16.3, 17.8 1.09
C58/J f 17.0 0.374   10 0.118 0.0221 16.4, 17.5 1.05
C58/J m 17.0 0.283   8 0.0999 0.0166 16.6, 17.4 0.96
CAST/EiJ f 15.1 0.289   9 0.0964 0.0192 14.6, 15.5 -1.38
CAST/EiJ m 15.0 0.336   9 0.112 0.0223 14.7, 15.6 -1.68
CZECHII/EiJ f 15.2 0.259   8 0.0915 0.017 14.9, 15.6 -1.25
CZECHII/EiJ m 15.3 0.377   9 0.126 0.0246 14.6, 15.8 -1.28
DBA/2J f 16.1 0.28   10 0.0884 0.0174 15.7, 16.6 -0.1
DBA/2J m 16.0 0.367   9 0.122 0.0229 15.4, 16.6 -0.36
FVB/NJ f 15.8 0.375   10 0.119 0.0237 15.1, 16.3 -0.48
FVB/NJ m 16.4 0.294   10 0.0931 0.018 16.1, 16.9 0.17
JF1/MsJ f 15.1 0.158   9 0.0527 0.0105 14.9, 15.3 -1.38
JF1/MsJ m 15.2 0.239   9 0.0795 0.0157 14.8, 15.6 -1.42
MOLF/EiJ f 14.4 0.305   10 0.0964 0.0211 13.9, 14.9 -2.27
MOLF/EiJ m 14.4 0.14   7 0.0528 0.00973 14.2, 14.6 -2.47
MSM/MsJ f 15.4 0.366   8 0.129 0.0238 14.9, 15.8 -0.99
MSM/MsJ m 15.4 0.129   7 0.0488 0.00838 15.2, 15.6 -1.15
NOD/ShiLtJ f 16.9 0.414   10 0.131 0.0246 16.2, 17.5 0.93
NOD/ShiLtJ m 17.0 0.396   10 0.125 0.0233 16.5, 17.6 0.96
NZB/BlNJ f 17.6 0.357   10 0.113 0.0203 17.1, 18.3 1.82
NZB/BlNJ m 17.0 0.427   10 0.135 0.0251 16.3, 17.6 0.96
NZW/LacJ f 17.0 0.267   10 0.0844 0.0157 16.6, 17.4 1.05
NZW/LacJ m 17.3 0.347   10 0.11 0.02 16.7, 17.8 1.36
PERA/EiJ f 16.2 0.392   8 0.139 0.0242 15.6, 16.8 0.03
PERA/EiJ m 16.5 0.298   10 0.0943 0.0181 15.9, 16.9 0.3
PL/J f 16.0 0.262   10 0.0827 0.0164 15.5, 16.4 -0.22
PL/J m 16.4 0.318   9 0.106 0.0194 15.9, 16.8 0.17
PWK/PhJ f 16.2 0.732   7 0.277 0.0451 15.8, 17.8 0.03
PWK/PhJ m 16.2 0.239   9 0.0795 0.0147 15.9, 16.6 -0.1
SEA/GnJ f 15.9 0.301   11 0.0908 0.0189 15.4, 16.3 -0.35
SEA/GnJ m 15.8 0.337   10 0.107 0.0213 15.1, 16.3 -0.62
SJL/J f 16.2 0.421   10 0.133 0.026 15.5, 16.7 0.03
SJL/J m 16.1 0.31   10 0.098 0.0192 15.7, 16.6 -0.23
SM/J f 15.6 0.368   9 0.123 0.0235 15.0, 16.1 -0.74
SM/J m 16.4 0.337   10 0.107 0.0206 15.8, 16.8 0.17
SPRET/EiJ f 16.1 0.552   7 0.209 0.0343 15.4, 17.1 -0.1
SPRET/EiJ m 16.2 0.452   10 0.143 0.0278 15.2, 16.9 -0.1
SWR/J f 16.5 0.242   10 0.0767 0.0147 16.3, 17.1 0.41
SWR/J m 16.8 0.22   10 0.0696 0.0131 16.4, 17.1 0.7
WSB/EiJ f 15.1 0.296   10 0.0936 0.0196 14.8, 15.7 -1.38
WSB/EiJ m 15.2 0.256   8 0.0905 0.0168 14.9, 15.6 -1.42


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 16.4 0.1162 16.6284 16.1716
129S1/SvImJ m 16.68 0.1162 16.9084 16.4516
A/J f 16.25 0.1162 16.4784 16.0216
A/J m 16.6125 0.13 16.8679 16.3571
AKR/J f 16.68 0.1162 16.9084 16.4516
AKR/J m 16.7444 0.1225 16.9852 16.5037
BALB/cJ f 17.25 0.1162 17.4784 17.0216
BALB/cJ m 17.13 0.1162 17.3584 16.9016
BTBR T+ Itpr3tf/J f 17.3 0.1225 17.5408 17.0592
BTBR T+ Itpr3tf/J m 17.32 0.1162 17.5484 17.0916
BUB/BnJ f 16.4333 0.1225 16.6741 16.1926
BUB/BnJ m 16.4875 0.13 16.7429 16.2321
C3H/HeJ f 15.55 0.1162 15.7784 15.3216
C3H/HeJ m 15.59 0.1162 15.8184 15.3616
C57BL/6J f 16.65 0.1162 16.8784 16.4216
C57BL/6J m 16.75 0.1162 16.9784 16.5216
C57L/J f 17.19 0.1162 17.4184 16.9616
C57L/J m 17.1 0.1162 17.3284 16.8716
C58/J f 16.97 0.1162 17.1984 16.7416
C58/J m 17.0375 0.13 17.2929 16.7821
CAST/EiJ f 15.0889 0.1225 15.3297 14.8481
CAST/EiJ m 15.0444 0.1225 15.2852 14.8037
CZECHII/EiJ f 15.2125 0.13 15.4679 14.9571
CZECHII/EiJ m 15.3222 0.1225 15.563 15.0815
DBA/2J f 16.06 0.1162 16.2884 15.8316
DBA/2J m 16.0222 0.1225 16.263 15.7815
FVB/NJ f 15.84 0.1162 16.0684 15.6116
FVB/NJ m 16.4 0.1162 16.6284 16.1716
JF1/MsJ f 15.1 0.1225 15.3408 14.8592
JF1/MsJ m 15.1778 0.1225 15.4185 14.937
MOLF/EiJ f 14.42 0.1162 14.6484 14.1916
MOLF/EiJ m 14.3571 0.1389 14.6301 14.0841
MSM/MsJ f 15.3625 0.13 15.6179 15.1071
MSM/MsJ m 15.4 0.1389 15.673 15.127
NOD/ShiLtJ f 16.86 0.1162 17.0884 16.6316
NOD/ShiLtJ m 16.99 0.1162 17.2184 16.7616
NZB/BlNJ f 17.55 0.1162 17.7784 17.3216
NZB/BlNJ m 17.03 0.1162 17.2584 16.8016
NZW/LacJ f 17.03 0.1162 17.2584 16.8016
NZW/LacJ m 17.33 0.1162 17.5584 17.1016
PERA/EiJ f 16.225 0.13 16.4804 15.9696
PERA/EiJ m 16.47 0.1162 16.6984 16.2416
PL/J f 15.98 0.1162 16.2084 15.7516
PL/J m 16.3889 0.1225 16.6297 16.1481
PWK/PhJ f 16.2429 0.1389 16.5159 15.9699
PWK/PhJ m 16.2222 0.1225 16.463 15.9815
SEA/GnJ f 15.9455 0.1108 16.1632 15.7277
SEA/GnJ m 15.83 0.1162 16.0584 15.6016
SJL/J f 16.22 0.1162 16.4484 15.9916
SJL/J m 16.14 0.1162 16.3684 15.9116
SM/J f 15.6444 0.1225 15.8852 15.4037
SM/J m 16.37 0.1162 16.5984 16.1416
SPRET/EiJ f 16.0857 0.1389 16.3587 15.8127
SPRET/EiJ m 16.22 0.1162 16.4484 15.9916
SWR/J f 16.51 0.1162 16.7384 16.2816
SWR/J m 16.78 0.1162 17.0084 16.5516
WSB/EiJ f 15.09 0.1162 15.3184 14.8616
WSB/EiJ m 15.2375 0.13 15.4929 14.9821


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 16.54 0.0822 16.7015 16.3785
A/J both 16.4313 0.0872 16.6026 16.2599
AKR/J both 16.7122 0.0845 16.8782 16.5463
BALB/cJ both 17.19 0.0822 17.3515 17.0285
BTBR T+ Itpr3tf/J both 17.31 0.0845 17.4759 17.1441
BUB/BnJ both 16.4604 0.0893 16.6359 16.2849
C3H/HeJ both 15.57 0.0822 15.7315 15.4085
C57BL/6J both 16.7 0.0822 16.8615 16.5385
C57L/J both 17.145 0.0822 17.3065 16.9835
C58/J both 17.0038 0.0872 17.1751 16.8324
CAST/EiJ both 15.0667 0.0866 15.2369 14.8964
CZECHII/EiJ both 15.2674 0.0893 15.4428 15.0919
DBA/2J both 16.0411 0.0845 16.207 15.8752
FVB/NJ both 16.12 0.0822 16.2815 15.9585
JF1/MsJ both 15.1389 0.0866 15.3091 14.9686
MOLF/EiJ both 14.3886 0.0906 14.5665 14.2106
MSM/MsJ both 15.3812 0.0951 15.5682 15.1943
NOD/ShiLtJ both 16.925 0.0822 17.0865 16.7635
NZB/BlNJ both 17.29 0.0822 17.4515 17.1285
NZW/LacJ both 17.18 0.0822 17.3415 17.0185
PERA/EiJ both 16.3475 0.0872 16.5188 16.1762
PL/J both 16.1844 0.0845 16.3504 16.0185
PWK/PhJ both 16.2325 0.0926 16.4145 16.0505
SEA/GnJ both 15.8877 0.0803 16.0455 15.7299
SJL/J both 16.18 0.0822 16.3415 16.0185
SM/J both 16.0072 0.0845 16.1732 15.8413
SPRET/EiJ both 16.1529 0.0906 16.3308 15.9749
SWR/J both 16.645 0.0822 16.8065 16.4835
WSB/EiJ both 15.1638 0.0872 15.3351 14.9924




  GWAS USING LINEAR MIXED MODELS