Project measure / variable:   Vinyard1   condyle_curve

ID, description, units MPD:30406   condyle_curve   angle of condylar curvature   [deg]  
Data set, strains Vinyard1   inbred   21 strains     sex: both     age: 9-12wks
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  STRAIN COMPARISON PLOT
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Vinyard1 - angle of condylar curvature



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested21 strains21 strains
Mean of the strain means129   deg 130   deg
Median of the strain means129   deg 130   deg
SD of the strain means± 5.07 ± 5.14
Coefficient of variation (CV)0.0393 0.0396
Min–max range of strain means119   –   138   deg 121   –   142   deg
Mean sample size per strain9.9   mice 9.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 34.17 34.17 0.8379 0.3606
strain 20 8759.1778 437.9589 10.7396 < 0.0001
sex:strain 20 1391.6932 69.5847 1.7064 0.0302
Residuals 372 15170.0508 40.7797


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 137.0 8.47   10 2.68 0.062 123.0, 149.0 1.56
129S1/SvImJ m 137.0 7.48   10 2.37 0.0545 125.0, 148.0 1.42
A/J f 130.0 4.16   10 1.32 0.0321 123.0, 136.0 0.18
A/J m 132.0 8.98   10 2.84 0.0682 117.0, 147.0 0.44
AKR/J f 129.0 3.84   9 1.28 0.0299 125.0, 137.0 -0.02
AKR/J m 121.0 6.66   10 2.11 0.055 108.0, 130.0 -1.7
BALB/cByJ f 126.0 7.17   10 2.27 0.057 118.0, 140.0 -0.61
BALB/cByJ m 124.0 9.32   10 2.95 0.075 114.0, 140.0 -1.11
BTBR T+ Itpr3tf/J f 138.0 6.82   10 2.16 0.0494 126.0, 147.0 1.76
BTBR T+ Itpr3tf/J m 132.0 4.62   10 1.46 0.0352 125.0, 138.0 0.44
C3H/HeJ f 125.0 5.56   10 1.76 0.0444 117.0, 134.0 -0.81
C3H/HeJ m 128.0 5.72   10 1.81 0.0448 115.0, 135.0 -0.33
C57BL/10J f 128.0 4.08   10 1.29 0.0318 120.0, 132.0 -0.22
C57BL/10J m 129.0 6.43   10 2.03 0.0498 117.0, 138.0 -0.14
C57BL/6J f 129.0 5.18   10 1.64 0.0401 122.0, 139.0 -0.02
C57BL/6J m 131.0 7.77   9 2.59 0.0592 119.0, 144.0 0.25
C57BLKS/J f 119.0 7.72   10 2.44 0.0649 108.0, 133.0 -1.99
C57BLKS/J m 123.0 4.94   10 1.56 0.0401 117.0, 132.0 -1.31
C57L/J f 125.0 4.37   10 1.38 0.0349 118.0, 131.0 -0.81
C57L/J m 130.0 5.49   10 1.73 0.0422 121.0, 137.0 0.06
C58/J f 126.0 4.7   8 1.66 0.0373 118.0, 131.0 -0.61
C58/J m 125.0 6.37   8 2.25 0.051 117.0, 135.0 -0.92
CAST/EiJ f 122.0 7.24   10 2.29 0.0592 112.0, 131.0 -1.4
CAST/EiJ m 128.0 8.42   10 2.66 0.0658 118.0, 146.0 -0.33
CBA/J f 132.0 6.86   10 2.17 0.0521 119.0, 141.0 0.57
CBA/J m 132.0 5.44   10 1.72 0.0413 124.0, 141.0 0.44
DBA/2J f 124.0 4.22   10 1.33 0.0339 118.0, 131.0 -1.01
DBA/2J m 125.0 4.75   10 1.5 0.038 119.0, 134.0 -0.92
FVB/NJ f 130.0 6.1   10 1.93 0.0467 121.0, 140.0 0.18
FVB/NJ m 125.0 4.66   10 1.47 0.0372 118.0, 134.0 -0.92
NOD/ShiLtJ f 136.0 8.52   10 2.69 0.0626 122.0, 149.0 1.36
NOD/ShiLtJ m 135.0 6.5   10 2.06 0.0482 126.0, 145.0 1.03
NON/ShiLtJ f 137.0 6.36   11 1.92 0.0465 123.0, 148.0 1.56
NON/ShiLtJ m 142.0 6.86   10 2.17 0.0482 130.0, 153.0 2.39
NZB/BlNJ f 129.0 6.48   10 2.05 0.0503 114.0, 135.0 -0.02
NZB/BlNJ m 126.0 3.59   10 1.14 0.0284 122.0, 132.0 -0.72
PL/J f 129.0 5.49   10 1.74 0.0427 117.0, 136.0 -0.02
PL/J m 132.0 8.18   9 2.73 0.0619 122.0, 149.0 0.44
RIIIS/J f 133.0 6.89   10 2.18 0.0517 125.0, 150.0 0.77
RIIIS/J m 135.0 5.81   10 1.84 0.043 127.0, 145.0 1.03
SJL/J f 127.0 7.44   10 2.35 0.0585 111.0, 140.0 -0.41
SJL/J m 132.0 5.01   10 1.58 0.038 126.0, 142.0 0.44


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 136.6 2.0194 140.5709 132.6291
129S1/SvImJ m 137.2 2.0194 141.1709 133.2291
A/J f 129.7 2.0194 133.6709 125.7291
A/J m 131.7 2.0194 135.6709 127.7291
AKR/J f 128.5556 2.1286 132.7412 124.3699
AKR/J m 121.1 2.0194 125.0709 117.1291
BALB/cByJ f 125.7 2.0194 129.6709 121.7291
BALB/cByJ m 124.2 2.0194 128.1709 120.2291
BTBR T+ Itpr3tf/J f 138.0 2.0194 141.9709 134.0291
BTBR T+ Itpr3tf/J m 131.5 2.0194 135.4709 127.5291
C3H/HeJ f 125.4 2.0194 129.3709 121.4291
C3H/HeJ m 127.9 2.0194 131.8709 123.9291
C57BL/10J f 128.2 2.0194 132.1709 124.2291
C57BL/10J m 129.0 2.0194 132.9709 125.0291
C57BL/6J f 129.2 2.0194 133.1709 125.2291
C57BL/6J m 131.2222 2.1286 135.4079 127.0366
C57BLKS/J f 119.0 2.0194 122.9709 115.0291
C57BLKS/J m 123.2 2.0194 127.1709 119.2291
C57L/J f 125.3 2.0194 129.2709 121.3291
C57L/J m 129.9 2.0194 133.8709 125.9291
C58/J f 126.125 2.2578 130.5646 121.6854
C58/J m 125.0 2.2578 129.4396 120.5604
CAST/EiJ f 122.2 2.0194 126.1709 118.2291
CAST/EiJ m 128.0 2.0194 131.9709 124.0291
CBA/J f 131.7 2.0194 135.6709 127.7291
CBA/J m 131.7 2.0194 135.6709 127.7291
DBA/2J f 124.4 2.0194 128.3709 120.4291
DBA/2J m 125.1 2.0194 129.0709 121.1291
FVB/NJ f 130.4 2.0194 134.3709 126.4291
FVB/NJ m 125.2 2.0194 129.1709 121.2291
NOD/ShiLtJ f 136.1 2.0194 140.0709 132.1291
NOD/ShiLtJ m 134.7 2.0194 138.6709 130.7291
NON/ShiLtJ f 136.9091 1.9254 140.6952 133.123
NON/ShiLtJ m 142.2 2.0194 146.1709 138.2291
NZB/BlNJ f 128.8 2.0194 132.7709 124.8291
NZB/BlNJ m 126.3 2.0194 130.2709 122.3291
PL/J f 128.8 2.0194 132.7709 124.8291
PL/J m 132.1111 2.1286 136.2968 127.9254
RIIIS/J f 133.1 2.0194 137.0709 129.1291
RIIIS/J m 135.3 2.0194 139.2709 131.3291
SJL/J f 127.2 2.0194 131.1709 123.2291
SJL/J m 131.8 2.0194 135.7709 127.8291


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 136.9 1.4279 139.7078 134.0922
A/J both 130.7 1.4279 133.5078 127.8922
AKR/J both 124.8278 1.4671 127.7125 121.943
BALB/cByJ both 124.95 1.4279 127.7578 122.1422
BTBR T+ Itpr3tf/J both 134.75 1.4279 137.5578 131.9422
C3H/HeJ both 126.65 1.4279 129.4578 123.8422
C57BL/10J both 128.6 1.4279 131.4078 125.7922
C57BL/6J both 130.2111 1.4671 133.0959 127.3263
C57BLKS/J both 121.1 1.4279 123.9078 118.2922
C57L/J both 127.6 1.4279 130.4078 124.7922
C58/J both 125.5625 1.5965 128.7017 122.4233
CAST/EiJ both 125.1 1.4279 127.9078 122.2922
CBA/J both 131.7 1.4279 134.5078 128.8922
DBA/2J both 124.75 1.4279 127.5578 121.9422
FVB/NJ both 127.8 1.4279 130.6078 124.9922
NOD/ShiLtJ both 135.4 1.4279 138.2078 132.5922
NON/ShiLtJ both 139.5545 1.3951 142.2978 136.8113
NZB/BlNJ both 127.55 1.4279 130.3578 124.7422
PL/J both 130.4556 1.4671 133.3403 127.5708
RIIIS/J both 134.2 1.4279 137.0078 131.3922
SJL/J both 129.5 1.4279 132.3078 126.6922




  GWAS USING LINEAR MIXED MODELS