Phenotype measure:   Vinyard1   condyle_art_hgt

ID, description, units MPD:30405   condyle_art_hgt   height of condylar articular surface   [mm]
Data set, strains Vinyard1   inbred   21 strains     sex: both     age: 9-12wks
Procedure bone dimensions
Ontology mappings

  STRAIN COMPARISON PLOT
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Vinyard1 - height of condylar articular surface



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested21 strains21 strains
Mean of the strain means0.394   mm 0.375   mm
Median of the strain means0.393   mm 0.361   mm
SD of the strain means± 0.0319 ± 0.0381
Coefficient of variation (CV)0.0808 0.101
Min–max range of strain means0.332   –   0.451   mm 0.323   –   0.435   mm
Mean sample size per strain9.9   mice 9.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0376 0.0376 9.9945 0.0017
strain 20 0.4029 0.0201 5.3521 < 0.0001
sex:strain 20 0.0815 0.0041 1.0822 0.3659
Residuals 372 1.4001 0.0038


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.332 0.0782   10 0.0247 0.236 0.207, 0.443 -1.96
129S1/SvImJ m 0.34 0.0757   10 0.0239 0.223 0.233, 0.501 -0.92
A/J f 0.361 0.0436   10 0.0138 0.121 0.281, 0.447 -1.05
A/J m 0.343 0.101   10 0.032 0.295 0.185, 0.507 -0.84
AKR/J f 0.414 0.0388   9 0.0129 0.0938 0.353, 0.46 0.61
AKR/J m 0.427 0.0674   10 0.0213 0.158 0.344, 0.546 1.37
BALB/cByJ f 0.43 0.0787   10 0.0249 0.183 0.31, 0.53 1.11
BALB/cByJ m 0.401 0.0705   10 0.0223 0.176 0.248, 0.524 0.68
BTBR T+ Itpr3tf/J f 0.378 0.0843   10 0.0266 0.223 0.26, 0.535 -0.52
BTBR T+ Itpr3tf/J m 0.428 0.0617   10 0.0195 0.144 0.355, 0.533 1.39
C3H/HeJ f 0.451 0.0457   10 0.0144 0.101 0.392, 0.539 1.77
C3H/HeJ m 0.423 0.0809   10 0.0256 0.191 0.354, 0.622 1.26
C57BL/10J f 0.371 0.0504   10 0.016 0.136 0.283, 0.451 -0.74
C57BL/10J m 0.339 0.0477   10 0.0151 0.141 0.281, 0.442 -0.95
C57BL/6J f 0.383 0.0453   10 0.0143 0.118 0.306, 0.436 -0.36
C57BL/6J m 0.361 0.0762   9 0.0254 0.211 0.256, 0.486 -0.37
C57BLKS/J f 0.443 0.0427   10 0.0135 0.0965 0.376, 0.49 1.52
C57BLKS/J m 0.387 0.0599   10 0.0189 0.155 0.277, 0.463 0.32
C57L/J f 0.443 0.0426   10 0.0135 0.0962 0.393, 0.518 1.52
C57L/J m 0.397 0.0511   10 0.0162 0.129 0.332, 0.495 0.58
C58/J f 0.426 0.0414   8 0.0146 0.0972 0.386, 0.49 0.99
C58/J m 0.428 0.0623   8 0.022 0.145 0.325, 0.505 1.39
CAST/EiJ f 0.406 0.0547   10 0.0173 0.135 0.346, 0.493 0.36
CAST/EiJ m 0.34 0.0548   10 0.0173 0.161 0.227, 0.408 -0.92
CBA/J f 0.399 0.0566   10 0.0179 0.142 0.332, 0.484 0.14
CBA/J m 0.385 0.0556   10 0.0176 0.144 0.296, 0.459 0.26
DBA/2J f 0.393 0.0603   10 0.0191 0.153 0.333, 0.499 -0.05
DBA/2J m 0.35 0.04   10 0.0127 0.114 0.293, 0.445 -0.66
FVB/NJ f 0.404 0.068   10 0.0215 0.168 0.293, 0.528 0.3
FVB/NJ m 0.435 0.043   10 0.0136 0.0987 0.348, 0.5 1.58
NOD/ShiLtJ f 0.387 0.0733   10 0.0232 0.189 0.291, 0.48 -0.23
NOD/ShiLtJ m 0.357 0.0674   10 0.0213 0.189 0.257, 0.472 -0.47
NON/ShiLtJ f 0.359 0.0513   11 0.0155 0.143 0.253, 0.426 -1.11
NON/ShiLtJ m 0.331 0.06   10 0.019 0.181 0.24, 0.469 -1.16
NZB/BlNJ f 0.397 0.0652   10 0.0206 0.164 0.347, 0.558 0.08
NZB/BlNJ m 0.396 0.0543   10 0.0172 0.137 0.317, 0.479 0.55
PL/J f 0.355 0.0378   10 0.0119 0.106 0.317, 0.44 -1.24
PL/J m 0.333 0.0651   9 0.0217 0.196 0.195, 0.401 -1.1
RIIIS/J f 0.375 0.0647   10 0.0205 0.173 0.252, 0.464 -0.61
RIIIS/J m 0.351 0.059   10 0.0187 0.168 0.271, 0.463 -0.63
SJL/J f 0.377 0.0823   10 0.026 0.218 0.259, 0.551 -0.55
SJL/J m 0.323 0.0391   10 0.0123 0.121 0.277, 0.392 -1.37


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.3319 0.0194 0.37 0.2938
129S1/SvImJ m 0.3403 0.0194 0.3784 0.3022
A/J f 0.3606 0.0194 0.3987 0.3225
A/J m 0.3427 0.0194 0.3808 0.3046
AKR/J f 0.4142 0.0204 0.4544 0.374
AKR/J m 0.4268 0.0194 0.4649 0.3887
BALB/cByJ f 0.4297 0.0194 0.4678 0.3916
BALB/cByJ m 0.401 0.0194 0.4391 0.3629
BTBR T+ Itpr3tf/J f 0.3783 0.0194 0.4164 0.3402
BTBR T+ Itpr3tf/J m 0.4275 0.0194 0.4656 0.3894
C3H/HeJ f 0.4505 0.0194 0.4886 0.4124
C3H/HeJ m 0.4233 0.0194 0.4614 0.3852
C57BL/10J f 0.371 0.0194 0.4091 0.3329
C57BL/10J m 0.3392 0.0194 0.3773 0.3011
C57BL/6J f 0.3833 0.0194 0.4214 0.3452
C57BL/6J m 0.3606 0.0204 0.4008 0.3203
C57BLKS/J f 0.4426 0.0194 0.4807 0.4045
C57BLKS/J m 0.3873 0.0194 0.4254 0.3492
C57L/J f 0.443 0.0194 0.4811 0.4049
C57L/J m 0.3973 0.0194 0.4354 0.3592
C58/J f 0.4258 0.0217 0.4684 0.3831
C58/J m 0.4284 0.0217 0.471 0.3857
CAST/EiJ f 0.4056 0.0194 0.4437 0.3675
CAST/EiJ m 0.3397 0.0194 0.3778 0.3016
CBA/J f 0.3993 0.0194 0.4374 0.3612
CBA/J m 0.3851 0.0194 0.4232 0.347
DBA/2J f 0.3928 0.0194 0.4309 0.3547
DBA/2J m 0.3503 0.0194 0.3884 0.3122
FVB/NJ f 0.404 0.0194 0.4421 0.3659
FVB/NJ m 0.4355 0.0194 0.4736 0.3974
NOD/ShiLtJ f 0.3874 0.0194 0.4255 0.3493
NOD/ShiLtJ m 0.3567 0.0194 0.3948 0.3186
NON/ShiLtJ f 0.3589 0.0185 0.3953 0.3225
NON/ShiLtJ m 0.3311 0.0194 0.3692 0.293
NZB/BlNJ f 0.3969 0.0194 0.435 0.3588
NZB/BlNJ m 0.3964 0.0194 0.4345 0.3583
PL/J f 0.3549 0.0194 0.393 0.3168
PL/J m 0.3329 0.0204 0.3731 0.2927
RIIIS/J f 0.375 0.0194 0.4131 0.3369
RIIIS/J m 0.3515 0.0194 0.3896 0.3134
SJL/J f 0.3775 0.0194 0.4156 0.3394
SJL/J m 0.3225 0.0194 0.3606 0.2844


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.3361 0.0137 0.3631 0.3091
A/J both 0.3517 0.0137 0.3786 0.3247
AKR/J both 0.4205 0.0141 0.4482 0.3928
BALB/cByJ both 0.4154 0.0137 0.4423 0.3884
BTBR T+ Itpr3tf/J both 0.4029 0.0137 0.4299 0.3759
C3H/HeJ both 0.4369 0.0137 0.4639 0.4099
C57BL/10J both 0.3551 0.0137 0.3821 0.3281
C57BL/6J both 0.3719 0.0141 0.3996 0.3442
C57BLKS/J both 0.4149 0.0137 0.4419 0.388
C57L/J both 0.4202 0.0137 0.4471 0.3932
C58/J both 0.4271 0.0153 0.4572 0.3969
CAST/EiJ both 0.3727 0.0137 0.3996 0.3457
CBA/J both 0.3922 0.0137 0.4192 0.3652
DBA/2J both 0.3716 0.0137 0.3985 0.3446
FVB/NJ both 0.4198 0.0137 0.4467 0.3928
NOD/ShiLtJ both 0.3721 0.0137 0.399 0.3451
NON/ShiLtJ both 0.345 0.0134 0.3714 0.3187
NZB/BlNJ both 0.3967 0.0137 0.4236 0.3697
PL/J both 0.3439 0.0141 0.3716 0.3162
RIIIS/J both 0.3633 0.0137 0.3902 0.3363
SJL/J both 0.35 0.0137 0.377 0.323




  GWAS USING LINEAR MIXED MODELS