Phenotype measure:   Donahue1   lower_jaw

ID, description, units MPD:11524   lower_jaw   length of lower jaw   [mm]
Data set, strains Donahue1   inbred w/CC7   29 strains     sex: both     age: 15-16wks
Procedure DXA
Ontology mappings

  STRAIN COMPARISON PLOT
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Donahue1 - length of lower jaw



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested29 strains29 strains
Mean of the strain means10.3   mm 10.5   mm
Median of the strain means10.4   mm 10.4   mm
SD of the strain means± 0.770 ± 0.793
Coefficient of variation (CV)0.0746 0.0756
Min–max range of strain means8.85   –   11.5   mm 8.96   –   12.0   mm
Mean sample size per strain9.5   mice 9.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 4.4 4.4 79.9408 < 0.0001
strain 28 306.8952 10.9605 199.136 < 0.0001
sex:strain 28 3.9591 0.1414 2.569 < 0.0001
Residuals 485 26.6946 0.055


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 11.4 0.267   10 0.0843 0.0234 10.9, 11.8 1.4
129S1/SvImJ m 11.8 0.231   10 0.0731 0.0196 11.5, 12.1 1.66
A/J f 10.9 0.294   10 0.0929 0.0269 10.4, 11.5 0.75
A/J m 10.9 0.29   8 0.103 0.0266 10.2, 11.1 0.52
AKR/J f 10.9 0.149   10 0.0473 0.0137 10.7, 11.1 0.75
AKR/J m 10.7 0.124   9 0.0412 0.0115 10.6, 11.0 0.27
BALB/cJ f 11.0 0.171   10 0.0542 0.0155 10.8, 11.3 0.88
BALB/cJ m 11.5 0.189   10 0.0597 0.0164 11.2, 11.9 1.28
BTBR T+ Itpr3tf/J f 11.5 0.983   9 0.328 0.0857 9.0, 12.1 1.53
BTBR T+ Itpr3tf/J m 12.0 0.256   10 0.0809 0.0213 11.7, 12.4 1.91
BUB/BnJ f 10.5 0.173   9 0.0577 0.0165 10.2, 10.8 0.23
BUB/BnJ m 10.6 0.146   8 0.0515 0.0137 10.5, 10.9 0.14
C3H/HeJ f 10.8 0.226   10 0.0716 0.021 10.5, 11.1 0.62
C3H/HeJ m 10.9 0.254   10 0.0803 0.0233 10.4, 11.2 0.52
C57BL/6J f 11.3 0.169   10 0.0533 0.015 11.0, 11.6 1.27
C57BL/6J m 11.3 0.164   10 0.0517 0.0145 10.9, 11.5 1.03
C57L/J f 10.9 0.227   10 0.0719 0.0208 10.5, 11.4 0.75
C57L/J m 11.2 0.141   10 0.0447 0.0126 11.0, 11.4 0.9
C58/J f 10.3 0.258   10 0.0815 0.0251 9.84, 10.6 -0.03
C58/J m 10.4 0.146   8 0.0515 0.014 10.2, 10.6 -0.11
CAST/EiJ f 9.16 0.254   9 0.0845 0.0277 8.79, 9.68 -1.51
CAST/EiJ m 9.19 0.131   9 0.0436 0.0142 9.08, 9.47 -1.64
CZECHII/EiJ f 9.3 0.143   8 0.0507 0.0154 9.12, 9.55 -1.33
CZECHII/EiJ m 9.55 0.279   9 0.093 0.0292 9.23, 9.93 -1.18
DBA/2J f 10.1 0.139   10 0.0441 0.0138 9.87, 10.3 -0.29
DBA/2J m 10.3 0.179   9 0.0595 0.0174 9.88, 10.5 -0.24
FVB/NJ f 10.3 0.207   10 0.0656 0.0202 9.97, 10.7 -0.03
FVB/NJ m 10.4 0.149   10 0.0471 0.0143 10.1, 10.6 -0.11
JF1/MsJ f 9.75 0.281   9 0.0936 0.0288 9.43, 10.2 -0.75
JF1/MsJ m 9.81 0.214   9 0.0713 0.0218 9.51, 10.2 -0.85
MOLF/EiJ f 8.85 0.164   10 0.052 0.0186 8.67, 9.15 -1.91
MOLF/EiJ m 8.96 0.198   7 0.0749 0.0221 8.62, 9.23 -1.93
MSM/MsJ f 8.91 0.249   8 0.0879 0.0279 8.62, 9.23 -1.84
MSM/MsJ m 9.04 0.0583   7 0.022 0.00644 8.97, 9.13 -1.83
NOD/ShiLtJ f 10.4 0.215   10 0.068 0.0206 10.1, 10.7 0.1
NOD/ShiLtJ m 11.0 0.267   10 0.0846 0.0244 10.7, 11.6 0.65
NZB/BlNJ f 11.5 0.19   10 0.06 0.0166 11.2, 11.8 1.53
NZB/BlNJ m 11.3 0.184   10 0.0581 0.0162 10.9, 11.5 1.03
NZW/LacJ f 11.1 0.158   10 0.0499 0.0143 10.8, 11.3 1.01
NZW/LacJ m 11.2 0.126   10 0.04 0.0113 11.0, 11.4 0.9
PERA/EiJ f 10.2 0.16   8 0.0567 0.0158 9.8, 10.3 -0.16
PERA/EiJ m 10.4 0.149   10 0.0473 0.0144 10.2, 10.6 -0.11
PL/J f 10.5 0.165   10 0.0521 0.0157 10.3, 10.8 0.23
PL/J m 10.6 0.142   9 0.0475 0.0135 10.4, 10.8 0.14
PWK/PhJ f 9.83 0.154   7 0.0583 0.0157 9.6, 9.99 -0.64
PWK/PhJ m 10.2 0.363   9 0.121 0.0356 9.32, 10.6 -0.36
SEA/GnJ f 10.7 0.16   11 0.0483 0.0149 10.4, 11.0 0.49
SEA/GnJ m 10.9 0.225   10 0.0712 0.0206 10.6, 11.3 0.52
SJL/J f 10.4 0.106   10 0.0335 0.0102 10.2, 10.6 0.1
SJL/J m 10.4 0.166   10 0.0526 0.016 10.2, 10.7 -0.11
SM/J f 9.21 0.228   9 0.0759 0.0247 8.85, 9.59 -1.45
SM/J m 9.57 0.122   10 0.0385 0.0127 9.4, 9.73 -1.16
SPRET/EiJ f 9.71 0.325   7 0.123 0.0335 9.39, 10.2 -0.8
SPRET/EiJ m 9.79 0.132   10 0.0418 0.0135 9.52, 9.96 -0.88
SWR/J f 10.3 0.103   10 0.0327 0.01 10.1, 10.4 -0.03
SWR/J m 10.4 0.152   10 0.0482 0.0147 10.2, 10.7 -0.11
WSB/EiJ f 9.69 0.211   10 0.0666 0.0218 9.29, 10.0 -0.82
WSB/EiJ m 9.82 0.145   8 0.0514 0.0148 9.57, 9.98 -0.84


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 11.4 0.0742 11.5458 11.2542
129S1/SvImJ m 11.77 0.0742 11.9158 11.6242
A/J f 10.92 0.0742 11.0658 10.7742
A/J m 10.8875 0.0829 11.0505 10.7245
AKR/J f 10.87 0.0742 11.0158 10.7242
AKR/J m 10.7444 0.0782 10.8981 10.5908
BALB/cJ f 11.04 0.0742 11.1858 10.8942
BALB/cJ m 11.53 0.0742 11.6758 11.3842
BTBR T+ Itpr3tf/J f 11.4778 0.0782 11.6314 11.3241
BTBR T+ Itpr3tf/J m 12.01 0.0742 12.1558 11.8642
BUB/BnJ f 10.4667 0.0782 10.6203 10.313
BUB/BnJ m 10.6125 0.0829 10.7755 10.4495
C3H/HeJ f 10.77 0.0742 10.9158 10.6242
C3H/HeJ m 10.9 0.0742 11.0458 10.7542
C57BL/6J f 11.28 0.0742 11.4258 11.1342
C57BL/6J m 11.27 0.0742 11.4158 11.1242
C57L/J f 10.95 0.0742 11.0958 10.8042
C57L/J m 11.2 0.0742 11.3458 11.0542
C58/J f 10.253 0.0742 10.3988 10.1072
C58/J m 10.3875 0.0829 10.5505 10.2245
CAST/EiJ f 9.1644 0.0782 9.3181 9.0108
CAST/EiJ m 9.1933 0.0782 9.347 9.0397
CZECHII/EiJ f 9.2988 0.0829 9.4617 9.1358
CZECHII/EiJ m 9.5511 0.0782 9.7048 9.3975
DBA/2J f 10.087 0.0742 10.2328 9.9412
DBA/2J m 10.2644 0.0782 10.4181 10.1108
FVB/NJ f 10.287 0.0742 10.4328 10.1412
FVB/NJ m 10.4 0.0742 10.5458 10.2542
JF1/MsJ f 9.7456 0.0782 9.8992 9.5919
JF1/MsJ m 9.8067 0.0782 9.9603 9.653
MOLF/EiJ f 8.851 0.0742 8.9968 8.7052
MOLF/EiJ m 8.9571 0.0887 9.1314 8.7829
MSM/MsJ f 8.9062 0.0829 9.0692 8.7433
MSM/MsJ m 9.0443 0.0887 9.2185 8.8701
NOD/ShiLtJ f 10.42 0.0742 10.5658 10.2742
NOD/ShiLtJ m 10.96 0.0742 11.1058 10.8142
NZB/BlNJ f 11.46 0.0742 11.6058 11.3142
NZB/BlNJ m 11.34 0.0742 11.4858 11.1942
NZW/LacJ f 11.06 0.0742 11.2058 10.9142
NZW/LacJ m 11.24 0.0742 11.3858 11.0942
PERA/EiJ f 10.15 0.0829 10.313 9.987
PERA/EiJ m 10.37 0.0742 10.5158 10.2242
PL/J f 10.46 0.0742 10.6058 10.3142
PL/J m 10.5556 0.0782 10.7092 10.4019
PWK/PhJ f 9.8271 0.0887 10.0014 9.6529
PWK/PhJ m 10.1911 0.0782 10.3448 10.0375
SEA/GnJ f 10.7182 0.0707 10.8572 10.5792
SEA/GnJ m 10.92 0.0742 11.0658 10.7742
SJL/J f 10.37 0.0742 10.5158 10.2242
SJL/J m 10.41 0.0742 10.5558 10.2642
SM/J f 9.2089 0.0782 9.3625 9.0552
SM/J m 9.571 0.0742 9.7168 9.4252
SPRET/EiJ f 9.7129 0.0887 9.8871 9.5386
SPRET/EiJ m 9.793 0.0742 9.9388 9.6472
SWR/J f 10.28 0.0742 10.4258 10.1342
SWR/J m 10.39 0.0742 10.5358 10.2442
WSB/EiJ f 9.685 0.0742 9.8308 9.5392
WSB/EiJ m 9.8225 0.0829 9.9855 9.6595


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 11.585 0.0525 11.6881 11.4819
A/J both 10.9038 0.0556 11.0131 10.7944
AKR/J both 10.8072 0.0539 10.9131 10.7013
BALB/cJ both 11.285 0.0525 11.3881 11.1819
BTBR T+ Itpr3tf/J both 11.7439 0.0539 11.8498 11.638
BUB/BnJ both 10.5396 0.057 10.6516 10.4276
C3H/HeJ both 10.835 0.0525 10.9381 10.7319
C57BL/6J both 11.275 0.0525 11.3781 11.1719
C57L/J both 11.075 0.0525 11.1781 10.9719
C58/J both 10.3202 0.0556 10.4296 10.2109
CAST/EiJ both 9.1789 0.0553 9.2875 9.0702
CZECHII/EiJ both 9.4249 0.057 9.5369 9.3129
DBA/2J both 10.1757 0.0539 10.2816 10.0698
FVB/NJ both 10.3435 0.0525 10.4466 10.2404
JF1/MsJ both 9.7761 0.0553 9.8848 9.6675
MOLF/EiJ both 8.9041 0.0578 9.0177 8.7905
MSM/MsJ both 8.9753 0.0607 9.0946 8.856
NOD/ShiLtJ both 10.69 0.0525 10.7931 10.5869
NZB/BlNJ both 11.4 0.0525 11.5031 11.2969
NZW/LacJ both 11.15 0.0525 11.2531 11.0469
PERA/EiJ both 10.26 0.0556 10.3693 10.1507
PL/J both 10.5078 0.0539 10.6137 10.4019
PWK/PhJ both 10.0091 0.0591 10.1253 9.893
SEA/GnJ both 10.8191 0.0513 10.9198 10.7184
SJL/J both 10.39 0.0525 10.4931 10.2869
SM/J both 9.3899 0.0539 9.4958 9.284
SPRET/EiJ both 9.7529 0.0578 9.8665 9.6393
SWR/J both 10.335 0.0525 10.4381 10.2319
WSB/EiJ both 9.7538 0.0556 9.8631 9.6444




  GWAS USING LINEAR MIXED MODELS