Phenotype measure:   Vinyard1   jaw_length

ID, description, units MPD:30403   jaw_length   distance from the incisor alveolus to the caudal surface of the mandibular condyle (jaw length)   [mm]
Data set, strains Vinyard1   inbred   21 strains     sex: both     age: 9-12wks
Procedure bone dimensions
Ontology mappings

  STRAIN COMPARISON PLOT
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Vinyard1 - distance from the incisor alveolus to the caudal surface of the mandibular condyle (jaw length)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested21 strains21 strains
Mean of the strain means11.0   mm 11.0   mm
Median of the strain means11.1   mm 11.0   mm
SD of the strain means± 0.614 ± 0.590
Coefficient of variation (CV)0.0560 0.0538
Min–max range of strain means9.38   –   12.2   mm 9.31   –   12.0   mm
Mean sample size per strain9.9   mice 9.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0161 0.0161 0.2641 0.6076
strain 20 142.3498 7.1175 116.8808 < 0.0001
sex:strain 20 2.0182 0.1009 1.6571 0.0382
Residuals 372 22.653 0.0609


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 11.1 0.199   10 0.0629 0.0179 10.8, 11.4 0.22
129S1/SvImJ m 11.4 0.183   10 0.0578 0.0161 11.1, 11.7 0.72
A/J f 10.5 0.145   10 0.0458 0.0138 10.3, 10.8 -0.75
A/J m 10.7 0.162   10 0.0512 0.0152 10.5, 11.0 -0.47
AKR/J f 10.9 0.179   9 0.0596 0.0164 10.8, 11.3 -0.1
AKR/J m 10.9 0.213   10 0.0674 0.0195 10.5, 11.3 -0.13
BALB/cByJ f 11.1 0.223   10 0.0706 0.0201 10.7, 11.5 0.22
BALB/cByJ m 11.2 0.137   10 0.0433 0.0122 11.0, 11.4 0.38
BTBR T+ Itpr3tf/J f 12.2 0.287   10 0.0907 0.0236 11.7, 12.7 2.01
BTBR T+ Itpr3tf/J m 12.0 0.155   10 0.049 0.0129 11.8, 12.3 1.74
C3H/HeJ f 10.9 0.238   10 0.0752 0.0218 10.5, 11.2 -0.1
C3H/HeJ m 10.7 0.25   10 0.079 0.0233 10.4, 11.1 -0.47
C57BL/10J f 11.5 0.24   10 0.076 0.0209 11.2, 11.9 0.87
C57BL/10J m 11.3 0.286   10 0.0904 0.0253 10.8, 11.6 0.55
C57BL/6J f 11.3 0.279   10 0.0883 0.0246 10.8, 11.7 0.55
C57BL/6J m 11.3 0.277   9 0.0925 0.0245 10.8, 11.7 0.55
C57BLKS/J f 11.7 0.202   10 0.064 0.0173 11.4, 12.1 1.2
C57BLKS/J m 11.4 0.317   10 0.1 0.0277 10.9, 11.8 0.72
C57L/J f 11.2 0.296   10 0.0936 0.0264 10.7, 11.5 0.39
C57L/J m 11.5 0.215   10 0.068 0.0187 11.1, 11.8 0.89
C58/J f 11.1 0.277   8 0.0981 0.0249 10.8, 11.6 0.22
C58/J m 11.1 0.185   8 0.0653 0.0166 10.9, 11.4 0.21
CAST/EiJ f 9.38 0.264   10 0.0836 0.0282 8.86, 9.68 -2.58
CAST/EiJ m 9.31 0.141   10 0.0446 0.0152 9.03, 9.44 -2.82
CBA/J f 10.8 0.326   10 0.103 0.0302 10.2, 11.2 -0.27
CBA/J m 10.8 0.231   10 0.0731 0.0215 10.4, 11.2 -0.3
DBA/2J f 10.5 0.331   10 0.105 0.0314 9.93, 11.1 -0.75
DBA/2J m 10.4 0.302   10 0.0956 0.0289 9.98, 10.8 -0.97
FVB/NJ f 10.8 0.215   10 0.068 0.0199 10.6, 11.2 -0.27
FVB/NJ m 11.0 0.156   10 0.0494 0.0142 10.8, 11.3 0.04
NOD/ShiLtJ f 11.3 0.16   10 0.0504 0.0141 11.1, 11.6 0.55
NOD/ShiLtJ m 11.4 0.178   10 0.0562 0.0156 11.1, 11.7 0.72
NON/ShiLtJ f 11.1 0.242   11 0.0731 0.0219 10.7, 11.5 0.22
NON/ShiLtJ m 11.0 0.298   10 0.0943 0.027 10.4, 11.4 0.04
NZB/BlNJ f 11.6 0.199   10 0.0629 0.0171 11.4, 12.1 1.04
NZB/BlNJ m 11.6 0.527   10 0.167 0.0453 10.4, 12.2 1.06
PL/J f 10.6 0.216   10 0.0684 0.0203 10.2, 10.9 -0.59
PL/J m 10.7 0.341   9 0.114 0.0318 10.3, 11.5 -0.47
RIIIS/J f 9.84 0.243   10 0.0767 0.0246 9.38, 10.2 -1.83
RIIIS/J m 9.96 0.254   10 0.0803 0.0255 9.43, 10.3 -1.72
SJL/J f 10.8 0.17   10 0.0537 0.0157 10.5, 11.0 -0.27
SJL/J m 10.8 0.17   10 0.0539 0.0157 10.5, 11.1 -0.3


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 11.12 0.078 11.2734 10.9666
129S1/SvImJ m 11.37 0.078 11.5234 11.2166
A/J f 10.51 0.078 10.6634 10.3566
A/J m 10.68 0.078 10.8334 10.5266
AKR/J f 10.9222 0.0823 11.084 10.7605
AKR/J m 10.91 0.078 11.0634 10.7566
BALB/cByJ f 11.09 0.078 11.2434 10.9366
BALB/cByJ m 11.19 0.078 11.3434 11.0366
BTBR T+ Itpr3tf/J f 12.17 0.078 12.3234 12.0166
BTBR T+ Itpr3tf/J m 12.02 0.078 12.1734 11.8666
C3H/HeJ f 10.91 0.078 11.0634 10.7566
C3H/HeJ m 10.73 0.078 10.8834 10.5766
C57BL/10J f 11.5 0.078 11.6534 11.3466
C57BL/10J m 11.32 0.078 11.4734 11.1666
C57BL/6J f 11.33 0.078 11.4834 11.1766
C57BL/6J m 11.3222 0.0823 11.484 11.1605
C57BLKS/J f 11.71 0.078 11.8634 11.5566
C57BLKS/J m 11.44 0.078 11.5934 11.2866
C57L/J f 11.21 0.078 11.3634 11.0566
C57L/J m 11.48 0.078 11.6334 11.3266
C58/J f 11.1375 0.0872 11.3091 10.9659
C58/J m 11.1375 0.0872 11.3091 10.9659
CAST/EiJ f 9.38 0.078 9.5334 9.2266
CAST/EiJ m 9.306 0.078 9.4594 9.1526
CBA/J f 10.78 0.078 10.9334 10.6266
CBA/J m 10.77 0.078 10.9234 10.6166
DBA/2J f 10.543 0.078 10.6964 10.3896
DBA/2J m 10.448 0.078 10.6014 10.2946
FVB/NJ f 10.82 0.078 10.9734 10.6666
FVB/NJ m 11.0 0.078 11.1534 10.8466
NOD/ShiLtJ f 11.29 0.078 11.4434 11.1366
NOD/ShiLtJ m 11.36 0.078 11.5134 11.2066
NON/ShiLtJ f 11.0545 0.0744 11.2009 10.9082
NON/ShiLtJ m 11.03 0.078 11.1834 10.8766
NZB/BlNJ f 11.62 0.078 11.7734 11.4666
NZB/BlNJ m 11.64 0.078 11.7934 11.4866
PL/J f 10.63 0.078 10.7834 10.4766
PL/J m 10.7111 0.0823 10.8729 10.5494
RIIIS/J f 9.843 0.078 9.9964 9.6896
RIIIS/J m 9.955 0.078 10.1084 9.8016
SJL/J f 10.8 0.078 10.9534 10.6466
SJL/J m 10.83 0.078 10.9834 10.6766


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 11.245 0.0552 11.3535 11.1365
A/J both 10.595 0.0552 10.7035 10.4865
AKR/J both 10.9161 0.0567 11.0276 10.8046
BALB/cByJ both 11.14 0.0552 11.2485 11.0315
BTBR T+ Itpr3tf/J both 12.095 0.0552 12.2035 11.9865
C3H/HeJ both 10.82 0.0552 10.9285 10.7115
C57BL/10J both 11.41 0.0552 11.5185 11.3015
C57BL/6J both 11.3261 0.0567 11.4376 11.2146
C57BLKS/J both 11.575 0.0552 11.6835 11.4665
C57L/J both 11.345 0.0552 11.4535 11.2365
C58/J both 11.1375 0.0617 11.2588 11.0162
CAST/EiJ both 9.343 0.0552 9.4515 9.2345
CBA/J both 10.775 0.0552 10.8835 10.6665
DBA/2J both 10.4955 0.0552 10.604 10.387
FVB/NJ both 10.91 0.0552 11.0185 10.8015
NOD/ShiLtJ both 11.325 0.0552 11.4335 11.2165
NON/ShiLtJ both 11.0423 0.0539 11.1483 10.9363
NZB/BlNJ both 11.63 0.0552 11.7385 11.5215
PL/J both 10.6706 0.0567 10.782 10.5591
RIIIS/J both 9.899 0.0552 10.0075 9.7905
SJL/J both 10.815 0.0552 10.9235 10.7065




  GWAS USING LINEAR MIXED MODELS