Phenotype measure:   Everett1   ramus_space

ID, description, units MPD:11017   ramus_space   mandible, concavity of posterior ramus   [mm2]
Data set, strains Everett1   inbred   14 strains     sex: both     age: 8-9wks
Procedure bone dimensions
Ontology mappings

  STRAIN COMPARISON PLOT
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Everett1 - mandible, concavity of posterior ramus



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested14 strains13 strains
Mean of the strain means2.19   mm2 2.41   mm2
Median of the strain means2.35   mm2 2.62   mm2
SD of the strain means± 0.473 ± 0.528
Coefficient of variation (CV)0.216 0.219
Min–max range of strain means1.04   –   2.61   mm2 1.06   –   2.93   mm2
Mean sample size per strain9.8   mice 10.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2.1035 2.1035 120.1597 < 0.0001
strain 12 58.7625 4.8969 279.7261 < 0.0001
sex:strain 12 0.9828 0.0819 4.6784 < 0.0001
Residuals 232 4.0614 0.0175


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 2.59 0.134   10 0.0423 0.0517 2.33, 2.7 0.84
129S1/SvImJ m 2.7 0.151   10 0.0476 0.0558 2.45, 2.91 0.55
A/J f 2.17 0.202   8 0.0714 0.0929 1.75, 2.42 -0.04
A/J m 2.42 0.161   10 0.0511 0.0666 2.09, 2.64 0.02
BALB/cByJ f 2.43 0.0946   10 0.0299 0.0389 2.25, 2.55 0.51
BALB/cByJ m 2.62 0.135   10 0.0425 0.0514 2.33, 2.77 0.4
C3H/HeJ f 2.23 0.0736   10 0.0233 0.033 2.11, 2.33 0.08
C3H/HeJ m 2.66 0.132   10 0.0418 0.0497 2.38, 2.83 0.48
C57BL/10J f 2.6 0.144   10 0.0456 0.0555 2.33, 2.75 0.86
C57BL/10J m 2.86 0.148   10 0.0468 0.0519 2.71, 3.14 0.85
C57BL/6J f 2.53 0.113   10 0.0357 0.0446 2.35, 2.68 0.72
C57BL/6J m 2.93 0.187   10 0.0591 0.0638 2.62, 3.27 0.99
CAST/EiJ f 1.56 0.114   10 0.0362 0.0734 1.39, 1.75 -1.33
CAST/EiJ m 1.64 0.137   10 0.0432 0.0831 1.41, 1.82 -1.45
CBA/J f 2.61 0.125   10 0.0395 0.0479 2.32, 2.79 0.89
CBA/J m 2.73 0.17   10 0.0537 0.0622 2.29, 2.88 0.61
DBA/2J f 2.58 0.124   10 0.0393 0.0483 2.36, 2.73 0.82
DBA/2J m 2.64 0.125   10 0.0395 0.0473 2.46, 2.83 0.44
FVB/NJ f 2.38 0.102   10 0.0322 0.0428 2.23, 2.52 0.4
FVB/NJ m 2.43 0.153   10 0.0485 0.0631 2.23, 2.65 0.04
MOLF/EiJ f 1.04 0.0667   10 0.0211 0.0639 0.93, 1.14 -2.43
MOLF/EiJ m 1.06 0.122   10 0.0386 0.115 0.81, 1.23 -2.55
PERA/EiJ f 1.93 0.0918   10 0.029 0.0475 1.8, 2.1 -0.55
PERA/EiJ m 2.09 0.107   10 0.0337 0.0509 1.98, 2.35 -0.6
SJL/J f 2.32 0.122   10 0.0386 0.0528 2.1, 2.46 0.27
SJL/J m 2.53 0.132   10 0.0417 0.052 2.35, 2.78 0.23
SPRET/EiJ f 1.7 0.145   8 0.0512 0.0852 1.5, 1.92 -1.04


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 2.586 0.0418 2.6684 2.5036
129S1/SvImJ m 2.701 0.0418 2.7834 2.6186
A/J f 2.1731 0.0468 2.2653 2.081
A/J m 2.423 0.0418 2.5054 2.3406
BALB/cByJ f 2.4335 0.0418 2.5159 2.3511
BALB/cByJ m 2.619 0.0418 2.7014 2.5366
C3H/HeJ f 2.2275 0.0418 2.3099 2.1451
C3H/HeJ m 2.661 0.0418 2.7434 2.5786
C57BL/10J f 2.596 0.0418 2.6784 2.5136
C57BL/10J m 2.855 0.0418 2.9374 2.7726
C57BL/6J f 2.534 0.0418 2.6164 2.4516
C57BL/6J m 2.9295 0.0418 3.0119 2.8471
CAST/EiJ f 1.5575 0.0418 1.6399 1.4751
CAST/EiJ m 1.6435 0.0418 1.7259 1.5611
CBA/J f 2.606 0.0418 2.6884 2.5236
CBA/J m 2.7335 0.0418 2.8159 2.6511
DBA/2J f 2.5765 0.0418 2.6589 2.4941
DBA/2J m 2.6395 0.0418 2.7219 2.5571
FVB/NJ f 2.3805 0.0418 2.4629 2.2981
FVB/NJ m 2.43 0.0418 2.5124 2.3476
MOLF/EiJ f 1.045 0.0418 1.1274 0.9626
MOLF/EiJ m 1.061 0.0418 1.1434 0.9786
PERA/EiJ f 1.932 0.0418 2.0144 1.8496
PERA/EiJ m 2.0925 0.0418 2.1749 2.0101
SJL/J f 2.316 0.0418 2.3984 2.2336
SJL/J m 2.534 0.0418 2.6164 2.4516


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 2.6435 0.0296 2.7018 2.5852
A/J both 2.2981 0.0314 2.3599 2.2362
BALB/cByJ both 2.5263 0.0296 2.5845 2.468
C3H/HeJ both 2.4443 0.0296 2.5025 2.386
C57BL/10J both 2.7255 0.0296 2.7838 2.6672
C57BL/6J both 2.7318 0.0296 2.79 2.6735
CAST/EiJ both 1.6005 0.0296 1.6588 1.5422
CBA/J both 2.6698 0.0296 2.728 2.6115
DBA/2J both 2.608 0.0296 2.6663 2.5497
FVB/NJ both 2.4053 0.0296 2.4635 2.347
MOLF/EiJ both 1.053 0.0296 1.1113 0.9947
PERA/EiJ both 2.0123 0.0296 2.0705 1.954
SJL/J both 2.425 0.0296 2.4833 2.3667




  GWAS USING LINEAR MIXED MODELS