Phenotype measure:   Everett1   teeth_space

ID, description, units MPD:11016   teeth_space   mandible, concavity of incisor to anterior molar   [mm2]
Data set, strains Everett1   inbred   14 strains     sex: both     age: 8-9wks
Procedure bone dimensions
Ontology mappings

  STRAIN COMPARISON PLOT
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Everett1 - mandible, concavity of incisor to anterior molar



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested14 strains13 strains
Mean of the strain means1.14   mm2 1.16   mm2
Median of the strain means1.17   mm2 1.18   mm2
SD of the strain means± 0.180 ± 0.201
Coefficient of variation (CV)0.158 0.174
Min–max range of strain means0.776   –   1.41   mm2 0.772   –   1.46   mm2
Mean sample size per strain10.0   mice 10.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.051 0.051 10.9419 0.0011
strain 12 8.8189 0.7349 157.7977 < 0.0001
sex:strain 12 0.067 0.0056 1.1995 0.2842
Residuals 234 1.0898 0.0047


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1.41 0.0774   10 0.0245 0.055 1.3, 1.5 1.5
129S1/SvImJ m 1.46 0.0932   10 0.0295 0.0638 1.32, 1.59 1.51
A/J f 1.14 0.048   10 0.0152 0.042 1.06, 1.22 0.0
A/J m 1.18 0.0729   10 0.023 0.0618 1.04, 1.29 0.12
BALB/cByJ f 1.22 0.053   10 0.0168 0.0434 1.14, 1.29 0.45
BALB/cByJ m 1.21 0.0573   10 0.0181 0.0473 1.13, 1.34 0.27
C3H/HeJ f 1.32 0.077   10 0.0244 0.0583 1.22, 1.45 1.0
C3H/HeJ m 1.38 0.0657   10 0.0208 0.0476 1.28, 1.49 1.11
C57BL/10J f 1.27 0.0609   10 0.0193 0.0482 1.17, 1.35 0.73
C57BL/10J m 1.26 0.107   10 0.0337 0.0848 0.99, 1.38 0.51
C57BL/6J f 1.23 0.0881   10 0.0279 0.0719 1.12, 1.39 0.5
C57BL/6J m 1.29 0.0651   10 0.0206 0.0504 1.19, 1.4 0.66
CAST/EiJ f 0.802 0.0437   10 0.0138 0.0545 0.765, 0.905 -1.87
CAST/EiJ m 0.772 0.0887   10 0.0281 0.115 0.58, 0.875 -1.92
CBA/J f 1.12 0.0732   10 0.0231 0.0654 0.92, 1.18 -0.11
CBA/J m 1.16 0.0437   10 0.0138 0.0376 1.07, 1.22 0.02
DBA/2J f 1.19 0.126   10 0.0397 0.106 0.875, 1.3 0.28
DBA/2J m 1.21 0.0576   10 0.0182 0.0475 1.13, 1.31 0.27
FVB/NJ f 1.15 0.0399   10 0.0126 0.0348 1.08, 1.23 0.06
FVB/NJ m 1.16 0.0307   10 0.0097 0.0265 1.11, 1.21 0.02
MOLF/EiJ f 0.776 0.0341   10 0.0108 0.044 0.74, 0.85 -2.02
MOLF/EiJ m 0.776 0.0445   10 0.0141 0.0573 0.71, 0.845 -1.9
PERA/EiJ f 1.06 0.0707   10 0.0224 0.0667 0.965, 1.2 -0.44
PERA/EiJ m 1.14 0.0609   10 0.0193 0.0533 1.04, 1.26 -0.08
SJL/J f 1.01 0.0576   10 0.0182 0.0571 0.935, 1.11 -0.72
SJL/J m 1.04 0.0395   10 0.0125 0.0378 0.97, 1.1 -0.58
SPRET/EiJ f 1.25 0.0477   8 0.0169 0.0382 1.19, 1.32 0.62


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1.4075 0.0216 1.45 1.365
129S1/SvImJ m 1.4605 0.0216 1.503 1.418
A/J f 1.1425 0.0216 1.185 1.1
A/J m 1.1785 0.0216 1.221 1.136
BALB/cByJ f 1.222 0.0216 1.2645 1.1795
BALB/cByJ m 1.2115 0.0216 1.254 1.169
C3H/HeJ f 1.321 0.0216 1.3635 1.2785
C3H/HeJ m 1.3805 0.0216 1.423 1.338
C57BL/10J f 1.2655 0.0216 1.308 1.223
C57BL/10J m 1.2565 0.0216 1.299 1.214
C57BL/6J f 1.2265 0.0216 1.269 1.184
C57BL/6J m 1.2915 0.0216 1.334 1.249
CAST/EiJ f 0.8015 0.0216 0.844 0.759
CAST/EiJ m 0.7725 0.0216 0.815 0.73
CBA/J f 1.1195 0.0216 1.162 1.077
CBA/J m 1.163 0.0216 1.2055 1.1205
DBA/2J f 1.186 0.0216 1.2285 1.1435
DBA/2J m 1.212 0.0216 1.2545 1.1695
FVB/NJ f 1.1475 0.0216 1.19 1.105
FVB/NJ m 1.1595 0.0216 1.202 1.117
MOLF/EiJ f 0.776 0.0216 0.8185 0.7335
MOLF/EiJ m 0.776 0.0216 0.8185 0.7335
PERA/EiJ f 1.061 0.0216 1.1035 1.0185
PERA/EiJ m 1.143 0.0216 1.1855 1.1005
SJL/J f 1.0085 0.0216 1.051 0.966
SJL/J m 1.044 0.0216 1.0865 1.0015


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1.434 0.0153 1.4641 1.4039
A/J both 1.1605 0.0153 1.1906 1.1304
BALB/cByJ both 1.2168 0.0153 1.2468 1.1867
C3H/HeJ both 1.3507 0.0153 1.3808 1.3207
C57BL/10J both 1.261 0.0153 1.2911 1.2309
C57BL/6J both 1.259 0.0153 1.2891 1.2289
CAST/EiJ both 0.787 0.0153 0.8171 0.7569
CBA/J both 1.1412 0.0153 1.1713 1.1112
DBA/2J both 1.199 0.0153 1.2291 1.1689
FVB/NJ both 1.1535 0.0153 1.1836 1.1234
MOLF/EiJ both 0.776 0.0153 0.8061 0.7459
PERA/EiJ both 1.102 0.0153 1.1321 1.0719
SJL/J both 1.0262 0.0153 1.0563 0.9962




  GWAS USING LINEAR MIXED MODELS