Phenotype measure:   Donahue1   inner_canthal

ID, description, units MPD:11522   inner_canthal   inner canthal distance   [mm]
Data set, strains Donahue1   inbred w/CC7   29 strains     sex: both     age: 15-16wks
Procedure DXA
Ontology mappings

  STRAIN COMPARISON PLOT
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Donahue1 - inner canthal distance



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested29 strains29 strains
Mean of the strain means5.66   mm 5.75   mm
Median of the strain means5.71   mm 5.77   mm
SD of the strain means± 0.406 ± 0.363
Coefficient of variation (CV)0.0717 0.0632
Min–max range of strain means4.83   –   6.55   mm 5.02   –   6.45   mm
Mean sample size per strain9.5   mice 9.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1.2325 1.2325 25.8128 < 0.0001
strain 28 72.846 2.6016 54.486 < 0.0001
sex:strain 28 3.7638 0.1344 2.8152 < 0.0001
Residuals 485 23.1582 0.0477


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 5.27 0.199   10 0.0628 0.0377 5.03, 5.62 -0.96
129S1/SvImJ m 5.46 0.16   10 0.0504 0.0292 5.13, 5.66 -0.79
A/J f 5.18 0.146   10 0.0463 0.0283 4.98, 5.4 -1.19
A/J m 5.38 0.173   8 0.0613 0.0322 5.15, 5.65 -1.01
AKR/J f 5.85 0.246   10 0.0778 0.0421 5.36, 6.25 0.46
AKR/J m 5.72 0.119   9 0.0397 0.0208 5.55, 5.91 -0.08
BALB/cJ f 5.31 0.124   10 0.0391 0.0233 5.15, 5.5 -0.87
BALB/cJ m 5.74 0.15   10 0.0473 0.0261 5.5, 5.92 -0.02
BTBR T+ Itpr3tf/J f 5.75 0.188   9 0.0627 0.0327 5.46, 6.01 0.22
BTBR T+ Itpr3tf/J m 5.96 0.287   10 0.0906 0.0481 5.58, 6.43 0.59
BUB/BnJ f 5.44 0.226   9 0.0753 0.0415 5.12, 5.77 -0.55
BUB/BnJ m 5.41 0.167   8 0.059 0.0308 5.21, 5.71 -0.93
C3H/HeJ f 6.1 0.393   10 0.124 0.0645 5.6, 6.68 1.08
C3H/HeJ m 6.15 0.239   10 0.0755 0.0388 5.76, 6.49 1.11
C57BL/6J f 5.92 0.201   10 0.0635 0.0339 5.6, 6.2 0.64
C57BL/6J m 6.04 0.33   10 0.104 0.0547 5.5, 6.59 0.81
C57L/J f 5.99 0.202   10 0.0638 0.0337 5.71, 6.31 0.81
C57L/J m 6.18 0.19   10 0.06 0.0307 5.81, 6.48 1.19
C58/J f 6.1 0.252   10 0.0798 0.0414 5.78, 6.66 1.08
C58/J m 6.23 0.194   8 0.0686 0.0311 5.91, 6.4 1.33
CAST/EiJ f 5.11 0.137   9 0.0458 0.0269 4.94, 5.31 -1.36
CAST/EiJ m 5.38 0.205   9 0.0682 0.038 5.1, 5.71 -1.01
CZECHII/EiJ f 5.25 0.229   8 0.0809 0.0436 5.0, 5.78 -1.01
CZECHII/EiJ m 5.46 0.209   9 0.0697 0.0383 5.15, 5.88 -0.79
DBA/2J f 5.43 0.207   10 0.0655 0.0382 5.07, 5.7 -0.57
DBA/2J m 5.42 0.282   9 0.094 0.052 5.02, 5.8 -0.9
FVB/NJ f 5.77 0.189   10 0.0596 0.0326 5.45, 6.1 0.27
FVB/NJ m 5.88 0.19   10 0.0602 0.0324 5.61, 6.26 0.37
JF1/MsJ f 5.31 0.181   9 0.0604 0.0341 5.03, 5.68 -0.87
JF1/MsJ m 5.49 0.217   9 0.0725 0.0396 5.24, 5.8 -0.71
MOLF/EiJ f 5.53 0.182   10 0.0576 0.0329 5.25, 5.77 -0.32
MOLF/EiJ m 5.4 0.207   7 0.0784 0.0384 5.04, 5.67 -0.96
MSM/MsJ f 4.83 0.154   8 0.0545 0.0319 4.58, 5.06 -2.05
MSM/MsJ m 5.02 0.135   7 0.0511 0.0269 4.88, 5.28 -2.0
NOD/ShiLtJ f 6.55 0.0945   10 0.0299 0.0144 6.42, 6.71 2.19
NOD/ShiLtJ m 6.45 0.261   10 0.0824 0.0404 5.74, 6.65 1.94
NZB/BlNJ f 6.49 0.234   10 0.074 0.0361 6.13, 6.82 2.04
NZB/BlNJ m 6.21 0.168   10 0.053 0.027 6.01, 6.52 1.27
NZW/LacJ f 6.2 0.325   10 0.103 0.0524 5.45, 6.54 1.33
NZW/LacJ m 6.07 0.162   10 0.0511 0.0266 5.83, 6.29 0.89
PERA/EiJ f 5.76 0.245   8 0.0865 0.0425 5.43, 6.23 0.24
PERA/EiJ m 5.88 0.282   10 0.0891 0.0479 5.4, 6.27 0.37
PL/J f 5.33 0.243   10 0.0768 0.0456 5.07, 5.8 -0.82
PL/J m 5.06 0.0707   9 0.0236 0.014 4.99, 5.18 -1.89
PWK/PhJ f 5.71 0.271   7 0.103 0.0475 5.27, 5.99 0.12
PWK/PhJ m 6.01 0.342   9 0.114 0.0569 5.31, 6.45 0.72
SEA/GnJ f 5.92 0.362   11 0.109 0.061 5.44, 6.64 0.64
SEA/GnJ m 5.91 0.286   10 0.0903 0.0483 5.5, 6.45 0.45
SJL/J f 5.61 0.129   10 0.0407 0.023 5.44, 5.8 -0.13
SJL/J m 5.77 0.185   10 0.0586 0.0321 5.47, 5.99 0.06
SM/J f 5.71 0.193   9 0.0644 0.0338 5.32, 6.05 0.12
SM/J m 5.98 0.188   10 0.0595 0.0315 5.77, 6.4 0.64
SPRET/EiJ f 5.6 0.195   7 0.0737 0.0348 5.23, 5.83 -0.15
SPRET/EiJ m 5.69 0.155   10 0.0489 0.0272 5.53, 5.96 -0.16
SWR/J f 5.81 0.131   10 0.0414 0.0225 5.61, 6.08 0.37
SWR/J m 5.9 0.191   10 0.0603 0.0323 5.65, 6.26 0.42
WSB/EiJ f 5.35 0.233   10 0.0737 0.0435 5.1, 5.71 -0.77
WSB/EiJ m 5.42 0.167   8 0.0589 0.0307 5.2, 5.66 -0.9


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 5.269 0.0691 5.4048 5.1332
129S1/SvImJ m 5.46 0.0691 5.5958 5.3242
A/J f 5.184 0.0691 5.3198 5.0482
A/J m 5.3763 0.0773 5.528 5.2245
AKR/J f 5.85 0.0691 5.9858 5.7142
AKR/J m 5.7222 0.0728 5.8653 5.5791
BALB/cJ f 5.307 0.0691 5.4428 5.1712
BALB/cJ m 5.739 0.0691 5.8748 5.6032
BTBR T+ Itpr3tf/J f 5.7533 0.0728 5.8965 5.6102
BTBR T+ Itpr3tf/J m 5.962 0.0691 6.0978 5.8262
BUB/BnJ f 5.4378 0.0728 5.5809 5.2947
BUB/BnJ m 5.41 0.0773 5.5618 5.2582
C3H/HeJ f 6.096 0.0691 6.2318 5.9602
C3H/HeJ m 6.155 0.0691 6.2908 6.0192
C57BL/6J f 5.924 0.0691 6.0598 5.7882
C57BL/6J m 6.041 0.0691 6.1768 5.9052
C57L/J f 5.99 0.0691 6.1258 5.8542
C57L/J m 6.183 0.0691 6.3188 6.0472
C58/J f 6.104 0.0691 6.2398 5.9682
C58/J m 6.2325 0.0773 6.3843 6.0807
CAST/EiJ f 5.1067 0.0728 5.2498 4.9635
CAST/EiJ m 5.3811 0.0728 5.5242 5.238
CZECHII/EiJ f 5.245 0.0773 5.3968 5.0932
CZECHII/EiJ m 5.4622 0.0728 5.6053 5.3191
DBA/2J f 5.426 0.0691 5.5618 5.2902
DBA/2J m 5.42 0.0728 5.5631 5.2769
FVB/NJ f 5.774 0.0691 5.9098 5.6382
FVB/NJ m 5.876 0.0691 6.0118 5.7402
JF1/MsJ f 5.3122 0.0728 5.4553 5.1691
JF1/MsJ m 5.4867 0.0728 5.6298 5.3435
MOLF/EiJ f 5.532 0.0691 5.6678 5.3962
MOLF/EiJ m 5.3971 0.0826 5.5594 5.2349
MSM/MsJ f 4.835 0.0773 4.9868 4.6832
MSM/MsJ m 5.0229 0.0826 5.1851 4.8606
NOD/ShiLtJ f 6.547 0.0691 6.6828 6.4112
NOD/ShiLtJ m 6.445 0.0691 6.5808 6.3092
NZB/BlNJ f 6.49 0.0691 6.6258 6.3542
NZB/BlNJ m 6.208 0.0691 6.3438 6.0722
NZW/LacJ f 6.2 0.0691 6.3358 6.0642
NZW/LacJ m 6.069 0.0691 6.2048 5.9332
PERA/EiJ f 5.7625 0.0773 5.9143 5.6107
PERA/EiJ m 5.882 0.0691 6.0178 5.7462
PL/J f 5.326 0.0691 5.4618 5.1902
PL/J m 5.0633 0.0728 5.2065 4.9202
PWK/PhJ f 5.7114 0.0826 5.8737 5.5491
PWK/PhJ m 6.0122 0.0728 6.1553 5.8691
SEA/GnJ f 5.9245 0.0659 6.054 5.7951
SEA/GnJ m 5.913 0.0691 6.0488 5.7772
SJL/J f 5.611 0.0691 5.7468 5.4752
SJL/J m 5.772 0.0691 5.9078 5.6362
SM/J f 5.7111 0.0728 5.8542 5.568
SM/J m 5.983 0.0691 6.1188 5.8472
SPRET/EiJ f 5.5957 0.0826 5.758 5.4334
SPRET/EiJ m 5.69 0.0691 5.8258 5.5542
SWR/J f 5.806 0.0691 5.9418 5.6702
SWR/J m 5.895 0.0691 6.0308 5.7592
WSB/EiJ f 5.353 0.0691 5.4888 5.2172
WSB/EiJ m 5.4188 0.0773 5.5705 5.267


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 5.3645 0.0489 5.4605 5.2685
A/J both 5.2801 0.0518 5.382 5.1783
AKR/J both 5.7861 0.0502 5.8847 5.6875
BALB/cJ both 5.523 0.0489 5.619 5.427
BTBR T+ Itpr3tf/J both 5.8577 0.0502 5.9563 5.759
BUB/BnJ both 5.4239 0.0531 5.5282 5.3196
C3H/HeJ both 6.1255 0.0489 6.2215 6.0295
C57BL/6J both 5.9825 0.0489 6.0785 5.8865
C57L/J both 6.0865 0.0489 6.1825 5.9905
C58/J both 6.1683 0.0518 6.2701 6.0664
CAST/EiJ both 5.2439 0.0515 5.3451 5.1427
CZECHII/EiJ both 5.3536 0.0531 5.4579 5.2493
DBA/2J both 5.423 0.0502 5.5216 5.3244
FVB/NJ both 5.825 0.0489 5.921 5.729
JF1/MsJ both 5.3994 0.0515 5.5006 5.2982
MOLF/EiJ both 5.4646 0.0538 5.5704 5.3588
MSM/MsJ both 4.9289 0.0565 5.04 4.8178
NOD/ShiLtJ both 6.496 0.0489 6.592 6.4
NZB/BlNJ both 6.349 0.0489 6.445 6.253
NZW/LacJ both 6.1345 0.0489 6.2305 6.0385
PERA/EiJ both 5.8222 0.0518 5.9241 5.7204
PL/J both 5.1947 0.0502 5.2933 5.096
PWK/PhJ both 5.8618 0.0551 5.97 5.7536
SEA/GnJ both 5.9188 0.0477 6.0126 5.825
SJL/J both 5.6915 0.0489 5.7875 5.5955
SM/J both 5.8471 0.0502 5.9457 5.7484
SPRET/EiJ both 5.6429 0.0538 5.7487 5.5371
SWR/J both 5.8505 0.0489 5.9465 5.7545
WSB/EiJ both 5.3859 0.0518 5.4877 5.284




  GWAS USING LINEAR MIXED MODELS