Phenotype measure:   Donahue1   nose_length

ID, description, units MPD:11519   nose_length   nose length   [mm]
Data set, strains Donahue1   inbred w/CC7   29 strains     sex: both     age: 15-16wks
Procedure DXA
Ontology mappings

  STRAIN COMPARISON PLOT
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Donahue1 - nose length



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested29 strains29 strains
Mean of the strain means14.8   mm 14.9   mm
Median of the strain means15.0   mm 15.1   mm
SD of the strain means± 0.919 ± 0.869
Coefficient of variation (CV)0.0622 0.0582
Min–max range of strain means12.3   –   16.4   mm 12.6   –   16.1   mm
Mean sample size per strain9.4   mice 9.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 5.1561 5.1561 47.2086 < 0.0001
strain 28 395.932 14.1404 129.469 < 0.0001
sex:strain 28 10.5721 0.3776 3.4571 < 0.0001
Residuals 484 52.8618 0.1092


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 14.6 0.503   10 0.159 0.0345 13.4, 15.1 -0.18
129S1/SvImJ m 15.0 0.283   10 0.0895 0.0189 14.6, 15.4 0.06
A/J f 14.7 0.253   10 0.08 0.0172 14.2, 15.0 -0.07
A/J m 15.0 0.22   8 0.0779 0.0147 14.7, 15.4 0.06
AKR/J f 15.4 0.477   10 0.151 0.031 14.7, 16.1 0.69
AKR/J m 15.4 0.285   9 0.0949 0.0185 15.0, 16.0 0.52
BALB/cJ f 15.6 0.299   10 0.0946 0.0191 15.2, 16.2 0.91
BALB/cJ m 15.6 0.546   10 0.173 0.0351 14.1, 16.0 0.75
BTBR T+ Itpr3tf/J f 15.9 0.158   9 0.0527 0.00994 15.6, 16.2 1.24
BTBR T+ Itpr3tf/J m 15.6 0.223   10 0.0706 0.0143 15.2, 15.9 0.75
BUB/BnJ f 15.0 0.167   9 0.0556 0.0111 14.7, 15.2 0.26
BUB/BnJ m 15.2 0.26   8 0.0921 0.0171 14.9, 15.6 0.29
C3H/HeJ f 13.3 0.435   10 0.138 0.0326 12.7, 14.2 -1.6
C3H/HeJ m 13.2 0.313   10 0.0991 0.0238 12.7, 13.6 -2.01
C57BL/6J f 15.6 0.334   10 0.106 0.0214 15.2, 16.2 0.91
C57BL/6J m 15.5 0.469   10 0.148 0.0302 14.4, 16.1 0.64
C57L/J f 15.6 0.403   10 0.128 0.0258 15.2, 16.6 0.91
C57L/J m 15.8 0.593   10 0.187 0.0374 14.8, 16.7 0.98
C58/J f 15.1 0.301   10 0.0952 0.02 14.4, 15.4 0.36
C58/J m 15.8 0.207   8 0.073 0.013 15.4, 16.1 0.98
CAST/EiJ f 13.6 0.28   9 0.0935 0.0206 13.2, 14.0 -1.27
CAST/EiJ m 13.9 0.187   9 0.0624 0.0135 13.6, 14.2 -1.2
CZECHII/EiJ f 14.0 0.149   8 0.0526 0.0106 13.8, 14.1 -0.83
CZECHII/EiJ m 14.1 0.199   9 0.0662 0.0141 13.9, 14.4 -0.97
DBA/2J f 14.6 0.288   10 0.0909 0.0196 13.9, 15.0 -0.18
DBA/2J m 14.9 0.327   9 0.109 0.0219 14.6, 15.7 -0.05
FVB/NJ f 14.8 0.204   10 0.0646 0.0138 14.5, 15.2 0.04
FVB/NJ m 15.1 0.17   10 0.0539 0.0113 14.8, 15.3 0.18
JF1/MsJ f 13.9 0.346   9 0.115 0.025 13.3, 14.6 -0.94
JF1/MsJ m 13.8 0.2   9 0.0667 0.0145 13.5, 14.1 -1.32
MOLF/EiJ f 12.3 0.19   10 0.06 0.0154 12.0, 12.6 -2.68
MOLF/EiJ m 12.6 0.107   7 0.0404 0.00849 12.4, 12.7 -2.7
MSM/MsJ f 13.3 0.311   8 0.11 0.0233 12.9, 13.6 -1.6
MSM/MsJ m 13.4 0.324   7 0.122 0.0241 12.9, 13.8 -1.78
NOD/ShiLtJ f 15.0 0.413   10 0.131 0.0275 14.2, 15.6 0.26
NOD/ShiLtJ m 15.2 0.559   10 0.177 0.0368 14.2, 16.4 0.29
NZB/BlNJ f 16.4 0.447   10 0.141 0.0272 15.5, 17.0 1.78
NZB/BlNJ m 16.1 0.291   10 0.092 0.0181 15.8, 16.6 1.33
NZW/LacJ f 15.8 0.251   10 0.0795 0.0159 15.2, 16.1 1.13
NZW/LacJ m 15.8 0.187   10 0.0593 0.0119 15.5, 16.1 0.98
PERA/EiJ f 15.1 0.318   8 0.113 0.0211 14.5, 15.6 0.36
PERA/EiJ m 15.3 0.245   10 0.0775 0.016 14.8, 15.6 0.41
PL/J f 14.6 0.158   10 0.0499 0.0108 14.4, 14.9 -0.18
PL/J m 14.7 0.232   9 0.0772 0.0157 14.3, 14.9 -0.28
PWK/PhJ f 15.0 0.244   7 0.0922 0.0163 14.7, 15.3 0.26
PWK/PhJ m 15.2 0.228   9 0.076 0.015 14.8, 15.5 0.29
SEA/GnJ f 15.0 0.391   11 0.118 0.026 14.4, 15.7 0.26
SEA/GnJ m 15.1 0.624   10 0.197 0.0415 13.8, 15.8 0.18
SJL/J f 15.5 0.244   10 0.0772 0.0158 15.2, 15.8 0.8
SJL/J m 15.5 0.313   10 0.0989 0.0202 15.0, 15.8 0.64
SM/J f 14.2 0.422   9 0.141 0.0298 13.4, 14.7 -0.62
SM/J m 15.1 0.393   10 0.124 0.026 14.2, 15.6 0.18
SPRET/EiJ f 14.9 0.416   7 0.157 0.0279 14.3, 15.4 0.15
SPRET/EiJ m 15.1 0.25   10 0.0792 0.0166 14.6, 15.4 0.18
SWR/J f 15.6 0.359   10 0.114 0.0231 15.2, 16.2 0.91
SWR/J m 16.0 0.218   10 0.069 0.0136 15.5, 16.2 1.21
WSB/EiJ f 13.8 0.194   9 0.0648 0.014 13.6, 14.3 -1.05
WSB/EiJ m 14.4 0.203   8 0.0718 0.0141 14.1, 14.7 -0.63


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 14.58 0.1045 14.7853 14.3747
129S1/SvImJ m 14.97 0.1045 15.1753 14.7647
A/J f 14.68 0.1045 14.8853 14.4747
A/J m 15.0 0.1168 15.2296 14.7704
AKR/J f 15.36 0.1045 15.5653 15.1547
AKR/J m 15.4111 0.1102 15.6276 15.1947
BALB/cJ f 15.65 0.1045 15.8553 15.4447
BALB/cJ m 15.56 0.1045 15.7653 15.3547
BTBR T+ Itpr3tf/J f 15.9 0.1102 16.1165 15.6835
BTBR T+ Itpr3tf/J m 15.59 0.1045 15.7953 15.3847
BUB/BnJ f 15.0444 0.1102 15.2609 14.828
BUB/BnJ m 15.225 0.1168 15.4546 14.9954
C3H/HeJ f 13.35 0.1045 13.5553 13.1447
C3H/HeJ m 13.16 0.1045 13.3653 12.9547
C57BL/6J f 15.64 0.1045 15.8453 15.4347
C57BL/6J m 15.53 0.1045 15.7353 15.3247
C57L/J f 15.64 0.1045 15.8453 15.4347
C57L/J m 15.84 0.1045 16.0453 15.6347
C58/J f 15.08 0.1045 15.2853 14.8747
C58/J m 15.8375 0.1168 16.0671 15.6079
CAST/EiJ f 13.6111 0.1102 13.8276 13.3947
CAST/EiJ m 13.8667 0.1102 14.0831 13.6502
CZECHII/EiJ f 13.975 0.1168 14.2046 13.7454
CZECHII/EiJ m 14.1222 0.1102 14.3387 13.9058
DBA/2J f 14.64 0.1045 14.8453 14.4347
DBA/2J m 14.9222 0.1102 15.1387 14.7058
FVB/NJ f 14.82 0.1045 15.0253 14.6147
FVB/NJ m 15.07 0.1045 15.2753 14.8647
JF1/MsJ f 13.8667 0.1102 14.0831 13.6502
JF1/MsJ m 13.8333 0.1102 14.0498 13.6169
MOLF/EiJ f 12.34 0.1045 12.5453 12.1347
MOLF/EiJ m 12.5857 0.1249 12.8311 12.3403
MSM/MsJ f 13.325 0.1168 13.5546 13.0954
MSM/MsJ m 13.4143 0.1249 13.6597 13.1689
NOD/ShiLtJ f 15.02 0.1045 15.2253 14.8147
NOD/ShiLtJ m 15.19 0.1045 15.3953 14.9847
NZB/BlNJ f 16.43 0.1045 16.6353 16.2247
NZB/BlNJ m 16.07 0.1045 16.2753 15.8647
NZW/LacJ f 15.81 0.1045 16.0153 15.6047
NZW/LacJ m 15.78 0.1045 15.9853 15.5747
PERA/EiJ f 15.0875 0.1168 15.3171 14.8579
PERA/EiJ m 15.3 0.1045 15.5053 15.0947
PL/J f 14.64 0.1045 14.8453 14.4347
PL/J m 14.7111 0.1102 14.9276 14.4947
PWK/PhJ f 14.9571 0.1249 15.2026 14.7117
PWK/PhJ m 15.2222 0.1102 15.4387 15.0058
SEA/GnJ f 15.0455 0.0996 15.2412 14.8497
SEA/GnJ m 15.05 0.1045 15.2553 14.8447
SJL/J f 15.48 0.1045 15.6853 15.2747
SJL/J m 15.47 0.1045 15.6753 15.2647
SM/J f 14.1556 0.1102 14.372 13.9391
SM/J m 15.09 0.1045 15.2953 14.8847
SPRET/EiJ f 14.9 0.1249 15.1454 14.6546
SPRET/EiJ m 15.06 0.1045 15.2653 14.8547
SWR/J f 15.57 0.1045 15.7753 15.3647
SWR/J m 16.01 0.1045 16.2153 15.8047
WSB/EiJ f 13.8444 0.1102 14.0609 13.628
WSB/EiJ m 14.4125 0.1168 14.6421 14.1829


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 14.775 0.0739 14.9202 14.6298
A/J both 14.84 0.0784 14.994 14.686
AKR/J both 15.3856 0.0759 15.5347 15.2364
BALB/cJ both 15.605 0.0739 15.7502 15.4598
BTBR T+ Itpr3tf/J both 15.745 0.0759 15.8942 15.5958
BUB/BnJ both 15.1347 0.0803 15.2925 14.977
C3H/HeJ both 13.255 0.0739 13.4002 13.1098
C57BL/6J both 15.585 0.0739 15.7302 15.4398
C57L/J both 15.74 0.0739 15.8852 15.5948
C58/J both 15.4587 0.0784 15.6128 15.3047
CAST/EiJ both 13.7389 0.0779 13.8919 13.5858
CZECHII/EiJ both 14.0486 0.0803 14.2064 13.8908
DBA/2J both 14.7811 0.0759 14.9303 14.6319
FVB/NJ both 14.945 0.0739 15.0902 14.7998
JF1/MsJ both 13.85 0.0779 14.0031 13.6969
MOLF/EiJ both 12.4629 0.0814 12.6229 12.3029
MSM/MsJ both 13.3696 0.0855 13.5377 13.2016
NOD/ShiLtJ both 15.105 0.0739 15.2502 14.9598
NZB/BlNJ both 16.25 0.0739 16.3952 16.1048
NZW/LacJ both 15.795 0.0739 15.9402 15.6498
PERA/EiJ both 15.1937 0.0784 15.3478 15.0397
PL/J both 14.6756 0.0759 14.8247 14.5264
PWK/PhJ both 15.0897 0.0833 15.2533 14.9261
SEA/GnJ both 15.0477 0.0722 15.1896 14.9059
SJL/J both 15.475 0.0739 15.6202 15.3298
SM/J both 14.6228 0.0759 14.772 14.4736
SPRET/EiJ both 14.98 0.0814 15.14 14.82
SWR/J both 15.79 0.0739 15.9352 15.6448
WSB/EiJ both 14.1285 0.0803 14.2862 13.9707




  GWAS USING LINEAR MIXED MODELS