Project measure / variable:   Everett1   molar_condyle

ID, description, units MPD:11010   molar_condyle   mandible, posterior molar to posterior condyle   [mm]  
Data set, strains Everett1   inbred   14 strains     sex: both     age: 8-9wks
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  STRAIN COMPARISON PLOT
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Everett1 - mandible, posterior molar to posterior condyle



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested14 strains13 strains
Mean of the strain means5.78   mm 5.83   mm
Median of the strain means5.72   mm 5.84   mm
SD of the strain means± 0.294 ± 0.352
Coefficient of variation (CV)0.0508 0.0603
Min–max range of strain means5.15   –   6.19   mm 5.09   –   6.28   mm
Mean sample size per strain10.0   mice 10.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.102 0.102 5.5357 0.0195
strain 12 25.4427 2.1202 115.0581 < 0.0001
sex:strain 12 0.4493 0.0374 2.0318 0.0225
Residuals 234 4.312 0.0184


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 6.0 0.127   10 0.0401 0.0211 5.82, 6.22 0.76
129S1/SvImJ m 5.96 0.156   10 0.0494 0.0262 5.74, 6.18 0.37
A/J f 5.57 0.128   10 0.0406 0.0231 5.37, 5.72 -0.71
A/J m 5.61 0.141   10 0.0446 0.0251 5.38, 5.8 -0.62
BALB/cByJ f 6.19 0.109   10 0.0345 0.0176 5.99, 6.31 1.4
BALB/cByJ m 6.16 0.095   10 0.0301 0.0154 5.96, 6.26 0.94
C3H/HeJ f 5.97 0.114   10 0.0359 0.019 5.76, 6.21 0.65
C3H/HeJ m 6.16 0.114   10 0.0361 0.0185 6.04, 6.32 0.94
C57BL/10J f 6.17 0.164   10 0.0519 0.0266 5.8, 6.38 1.34
C57BL/10J m 6.28 0.191   10 0.0603 0.0303 6.0, 6.59 1.28
C57BL/6J f 6.02 0.158   10 0.05 0.0262 5.7, 6.21 0.82
C57BL/6J m 6.15 0.127   10 0.04 0.0206 5.99, 6.37 0.91
CAST/EiJ f 5.15 0.192   10 0.0608 0.0373 4.88, 5.57 -2.14
CAST/EiJ m 5.09 0.174   10 0.055 0.0342 4.74, 5.37 -2.1
CBA/J f 5.72 0.187   10 0.0591 0.0327 5.23, 5.88 -0.2
CBA/J m 5.84 0.117   10 0.037 0.0201 5.7, 5.99 0.03
DBA/2J f 5.72 0.0984   10 0.0311 0.0172 5.55, 5.87 -0.2
DBA/2J m 5.72 0.0879   10 0.0278 0.0154 5.62, 5.84 -0.31
FVB/NJ f 5.61 0.0788   10 0.0249 0.0141 5.48, 5.72 -0.57
FVB/NJ m 5.66 0.136   10 0.043 0.024 5.47, 5.82 -0.48
MOLF/EiJ f 5.43 0.114   10 0.0361 0.021 5.21, 5.59 -1.19
MOLF/EiJ m 5.32 0.0953   10 0.0301 0.0179 5.16, 5.46 -1.45
PERA/EiJ f 5.73 0.131   10 0.0414 0.0228 5.5, 5.86 -0.16
PERA/EiJ m 5.78 0.0822   10 0.026 0.0142 5.67, 5.89 -0.14
SJL/J f 5.97 0.171   10 0.0539 0.0285 5.71, 6.19 0.65
SJL/J m 6.04 0.134   10 0.0424 0.0222 5.71, 6.2 0.6
SPRET/EiJ f 5.64 0.203   8 0.0716 0.0359 5.27, 5.84 -0.47


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 5.995 0.0429 6.0796 5.9104
129S1/SvImJ m 5.9625 0.0429 6.0471 5.8779
A/J f 5.5695 0.0429 5.6541 5.4849
A/J m 5.6095 0.0429 5.6941 5.5249
BALB/cByJ f 6.1915 0.0429 6.2761 6.1069
BALB/cByJ m 6.158 0.0429 6.2426 6.0734
C3H/HeJ f 5.968 0.0429 6.0526 5.8834
C3H/HeJ m 6.1625 0.0429 6.2471 6.0779
C57BL/10J f 6.173 0.0429 6.2576 6.0884
C57BL/10J m 6.282 0.0429 6.3666 6.1974
C57BL/6J f 6.024 0.0429 6.1086 5.9394
C57BL/6J m 6.1535 0.0429 6.2381 6.0689
CAST/EiJ f 5.1515 0.0429 5.2361 5.0669
CAST/EiJ m 5.087 0.0429 5.1716 5.0024
CBA/J f 5.7205 0.0429 5.8051 5.6359
CBA/J m 5.837 0.0429 5.9216 5.7524
DBA/2J f 5.7205 0.0429 5.8051 5.6359
DBA/2J m 5.717 0.0429 5.8016 5.6324
FVB/NJ f 5.6075 0.0429 5.6921 5.5229
FVB/NJ m 5.6605 0.0429 5.7451 5.5759
MOLF/EiJ f 5.434 0.0429 5.5186 5.3494
MOLF/EiJ m 5.3225 0.0429 5.4071 5.2379
PERA/EiJ f 5.73 0.0429 5.8146 5.6454
PERA/EiJ m 5.784 0.0429 5.8686 5.6994
SJL/J f 5.9735 0.0429 6.0581 5.8889
SJL/J m 6.0375 0.0429 6.1221 5.9529


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 5.9788 0.0304 6.0386 5.9189
A/J both 5.5895 0.0304 5.6493 5.5297
BALB/cByJ both 6.1748 0.0304 6.2346 6.1149
C3H/HeJ both 6.0653 0.0304 6.1251 6.0054
C57BL/10J both 6.2275 0.0304 6.2873 6.1677
C57BL/6J both 6.0888 0.0304 6.1486 6.0289
CAST/EiJ both 5.1193 0.0304 5.1791 5.0594
CBA/J both 5.7788 0.0304 5.8386 5.7189
DBA/2J both 5.7188 0.0304 5.7786 5.6589
FVB/NJ both 5.634 0.0304 5.6938 5.5742
MOLF/EiJ both 5.3783 0.0304 5.4381 5.3184
PERA/EiJ both 5.757 0.0304 5.8168 5.6972
SJL/J both 6.0055 0.0304 6.0653 5.9457




  GWAS USING LINEAR MIXED MODELS