Phenotype measure:   Vinyard1   masseter_attach_ratio

ID, description, units MPD:30402   masseter_attach_ratio   masseter attachment ratio   [ratio]
Data set, strains Vinyard1   inbred   21 strains     sex: both     age: 9-12wks
Procedure bone dimensions
Ontology mappings

  STRAIN COMPARISON PLOT
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Vinyard1 - masseter attachment ratio



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested21 strains21 strains
Mean of the strain means1.22   ratio 1.19   ratio
Median of the strain means1.23   ratio 1.19   ratio
SD of the strain means± 0.0453 ± 0.0499
Coefficient of variation (CV)0.0370 0.0420
Min–max range of strain means1.12   –   1.29   ratio 1.09   –   1.26   ratio
Mean sample size per strain9.9   mice 9.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.1241 0.1241 9.8084 0.0019
strain 20 0.6278 0.0314 2.4804 0.0005
sex:strain 20 0.2343 0.0117 0.9256 0.5545
Residuals 372 4.7077 0.0127


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1.25 0.122   10 0.0387 0.0979 1.08, 1.4 0.61
129S1/SvImJ m 1.18 0.0757   10 0.0239 0.064 1.07, 1.27 -0.17
A/J f 1.26 0.158   10 0.0501 0.126 1.06, 1.55 0.83
A/J m 1.21 0.137   10 0.0433 0.113 1.04, 1.53 0.43
AKR/J f 1.2 0.185   10 0.0587 0.155 1.05, 1.61 -0.49
AKR/J m 1.26 0.178   10 0.0564 0.141 1.09, 1.67 1.43
BALB/cByJ f 1.17 0.0961   10 0.0304 0.0822 1.02, 1.33 -1.16
BALB/cByJ m 1.09 0.0588   10 0.0186 0.0539 1.01, 1.23 -1.97
BTBR T+ Itpr3tf/J f 1.29 0.115   10 0.0363 0.0893 1.11, 1.51 1.49
BTBR T+ Itpr3tf/J m 1.2 0.107   10 0.0337 0.0886 1.05, 1.35 0.23
C3H/HeJ f 1.23 0.0794   10 0.0251 0.0645 1.14, 1.4 0.17
C3H/HeJ m 1.17 0.11   10 0.0346 0.0936 1.01, 1.32 -0.37
C57BL/10J f 1.23 0.0866   10 0.0274 0.0703 1.11, 1.36 0.17
C57BL/10J m 1.2 0.0682   10 0.0216 0.0569 1.06, 1.29 0.23
C57BL/6J f 1.24 0.085   10 0.0269 0.0688 1.13, 1.42 0.39
C57BL/6J m 1.19 0.0835   9 0.0278 0.07 1.09, 1.31 0.03
C57BLKS/J f 1.29 0.11   10 0.0348 0.0851 1.12, 1.45 1.49
C57BLKS/J m 1.23 0.0834   10 0.0264 0.0681 1.15, 1.4 0.83
C57L/J f 1.27 0.126   10 0.04 0.0992 1.11, 1.47 1.05
C57L/J m 1.19 0.0497   10 0.0157 0.0419 1.11, 1.25 0.03
C58/J f 1.14 0.0544   8 0.0192 0.0477 1.06, 1.22 -1.82
C58/J m 1.14 0.0512   8 0.0181 0.0448 1.08, 1.23 -0.97
CAST/EiJ f 1.2 0.118   10 0.0374 0.0986 1.01, 1.36 -0.49
CAST/EiJ m 1.26 0.13   10 0.0411 0.104 1.1, 1.41 1.43
CBA/J f 1.2 0.13   10 0.0411 0.109 1.07, 1.54 -0.49
CBA/J m 1.14 0.0935   10 0.0296 0.0822 1.04, 1.27 -0.97
DBA/2J f 1.19 0.11   10 0.0347 0.0921 1.06, 1.38 -0.72
DBA/2J m 1.19 0.128   10 0.0406 0.108 1.02, 1.45 0.03
FVB/NJ f 1.12 0.0743   10 0.0235 0.0661 1.02, 1.21 -2.26
FVB/NJ m 1.18 0.128   10 0.0405 0.108 1.05, 1.43 -0.17
NOD/ShiLtJ f 1.2 0.0847   10 0.0268 0.0708 1.04, 1.32 -0.49
NOD/ShiLtJ m 1.1 0.0895   10 0.0283 0.081 0.97, 1.26 -1.77
NON/ShiLtJ f 1.27 0.115   11 0.0348 0.0912 1.1, 1.5 1.05
NON/ShiLtJ m 1.26 0.134   10 0.0425 0.107 1.05, 1.45 1.43
NZB/BlNJ f 1.25 0.12   10 0.038 0.096 1.12, 1.42 0.61
NZB/BlNJ m 1.21 0.121   10 0.0382 0.1 1.03, 1.44 0.43
PL/J f 1.24 0.131   10 0.0413 0.105 1.1, 1.48 0.39
PL/J m 1.23 0.0916   9 0.0305 0.0744 1.11, 1.34 0.83
RIIIS/J f 1.2 0.185   9 0.0616 0.154 0.9, 1.52 -0.49
RIIIS/J m 1.11 0.133   10 0.042 0.12 0.89, 1.36 -1.57
SJL/J f 1.23 0.0913   10 0.0289 0.0743 1.09, 1.37 0.17
SJL/J m 1.22 0.0677   10 0.0214 0.0556 1.09, 1.3 0.63


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1.251 0.0356 1.321 1.181
129S1/SvImJ m 1.183 0.0356 1.253 1.113
A/J f 1.256 0.0356 1.326 1.186
A/J m 1.211 0.0356 1.281 1.141
AKR/J f 1.197 0.0356 1.267 1.127
AKR/J m 1.262 0.0356 1.332 1.192
BALB/cByJ f 1.17 0.0356 1.24 1.1
BALB/cByJ m 1.091 0.0356 1.161 1.021
BTBR T+ Itpr3tf/J f 1.285 0.0356 1.355 1.215
BTBR T+ Itpr3tf/J m 1.204 0.0356 1.274 1.134
C3H/HeJ f 1.231 0.0356 1.301 1.161
C3H/HeJ m 1.17 0.0356 1.24 1.1
C57BL/10J f 1.232 0.0356 1.302 1.162
C57BL/10J m 1.199 0.0356 1.269 1.129
C57BL/6J f 1.236 0.0356 1.306 1.166
C57BL/6J m 1.1922 0.0375 1.266 1.1185
C57BLKS/J f 1.292 0.0356 1.362 1.222
C57BLKS/J m 1.225 0.0356 1.295 1.155
C57L/J f 1.274 0.0356 1.344 1.204
C57L/J m 1.187 0.0356 1.257 1.117
C58/J f 1.1425 0.0398 1.2207 1.0643
C58/J m 1.1425 0.0398 1.2207 1.0643
CAST/EiJ f 1.201 0.0356 1.271 1.131
CAST/EiJ m 1.255 0.0356 1.325 1.185
CBA/J f 1.195 0.0356 1.265 1.125
CBA/J m 1.138 0.0356 1.208 1.068
DBA/2J f 1.19 0.0356 1.26 1.12
DBA/2J m 1.186 0.0356 1.256 1.116
FVB/NJ f 1.124 0.0356 1.194 1.054
FVB/NJ m 1.182 0.0356 1.252 1.112
NOD/ShiLtJ f 1.197 0.0356 1.267 1.127
NOD/ShiLtJ m 1.104 0.0356 1.174 1.034
NON/ShiLtJ f 1.2664 0.0339 1.3331 1.1997
NON/ShiLtJ m 1.257 0.0356 1.327 1.187
NZB/BlNJ f 1.251 0.0356 1.321 1.181
NZB/BlNJ m 1.207 0.0356 1.277 1.137
PL/J f 1.243 0.0356 1.313 1.173
PL/J m 1.2311 0.0375 1.3048 1.1574
RIIIS/J f 1.1978 0.0375 1.2715 1.124
RIIIS/J m 1.107 0.0356 1.177 1.037
SJL/J f 1.228 0.0356 1.298 1.158
SJL/J m 1.217 0.0356 1.287 1.147


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1.217 0.0252 1.2665 1.1675
A/J both 1.2335 0.0252 1.283 1.184
AKR/J both 1.2295 0.0252 1.279 1.18
BALB/cByJ both 1.1305 0.0252 1.18 1.081
BTBR T+ Itpr3tf/J both 1.2445 0.0252 1.294 1.195
C3H/HeJ both 1.2005 0.0252 1.25 1.151
C57BL/10J both 1.2155 0.0252 1.265 1.166
C57BL/6J both 1.2141 0.0258 1.2649 1.1633
C57BLKS/J both 1.2585 0.0252 1.308 1.209
C57L/J both 1.2305 0.0252 1.28 1.181
C58/J both 1.1425 0.0281 1.1978 1.0872
CAST/EiJ both 1.228 0.0252 1.2775 1.1785
CBA/J both 1.1665 0.0252 1.216 1.117
DBA/2J both 1.188 0.0252 1.2375 1.1385
FVB/NJ both 1.153 0.0252 1.2025 1.1035
NOD/ShiLtJ both 1.1505 0.0252 1.2 1.101
NON/ShiLtJ both 1.2617 0.0246 1.31 1.2134
NZB/BlNJ both 1.229 0.0252 1.2785 1.1795
PL/J both 1.2371 0.0258 1.2879 1.1862
RIIIS/J both 1.1524 0.0258 1.2032 1.1016
SJL/J both 1.2225 0.0252 1.272 1.173




  GWAS USING LINEAR MIXED MODELS