MPD: Phenotype measures mapped to MP:0001663, abnormal digestive system physiology

Phenotype measures associated with ontology term
MP:0001663 'abnormal digestive system physiology'

All measures in this list are mapped to the ontology descendants of MP:0001663. None are mapped to MP:0001663 directly.

MP:0003303 peritoneal inflammation
MP:0005310 abnormal salivary gland physiology
MP:0010377 abnormal gut flora balance
MP:0020147 abnormal defecation amount

This MP term has been mapped to these MPD phenotype measurements to help users find relevant data. It should be noted that MPD measurements typically have a mixture of high-end, low-end and "normal" readings.

Sort/ Pick	Data set	Procedure / Protocol	Treatment	Phenotype Measure / Variable (click to view)	Panel	No. of Strains	Sex	Age	Sample Size (Avg)	Year
Brown1:10	Brown1	open field test	(none)	fecal boli count, 5 min test, day 1 [n] defecation_d1_OFT 9410	inbred	14	both	10wks	N=13	2004

Brown1:16	Brown1	light-dark box	(none)	fecal boli count [n] defecation_LD 9416	inbred	14	both	10wks	N=13	2004

Brown1:24	Brown1	elevated plus maze	(none)	fecal boli count [n] defecation_EPM 9424	inbred	14	both	10wks	N=13	2004

Brown1:32	Brown1	elevated zero maze	(none)	fecal boli count [n] defecation_EZM 9432	inbred	13	both	10wks	N=9	2004

Chesler2:41	Chesler2	open field test	(none)	number of fecal boli, 10 min test [n] fecal_boli_OFT 43461	CC diallel w/par	50	both	7-15wks	N=2	2011

Chesler2:48	Chesler2	light-dark box	(none)	number of fecal boli, 10 min test [n] fecal_boli_LD 43468	CC diallel w/par	50	both	7-15wks	N=2	2011

Chesler3:61	Chesler3	open field test	(none)	number of fecal boli, 10 min test [n] fecal_boli_OFT 43561	CC pre w/par	232	both	7-15wks	N=1	2011

Chesler3:68	Chesler3	light-dark box	(none)	number of fecal boli, 10 min test [n] fecal_boli_LD 43568	CC pre w/par	193	both	7-15wks	N=1	2011

Cowell1:2	Cowell1	in vitro assay	Staphylococcus aureus	log₁₀ bacterial colony count from peritoneal fluid 24h post-infection (x 10³) (CFU/mL) [log(n/mL)] peritoneal_CFU 49002	inbred	13	f	8wks	N=5	2012

Crusio1:12	Crusio1	open field test	(none)	number of fecal boli deposited, 20 min test [n] defec 62012	BXD w/par	55	both	10-12wks	N=8	2018

Flaherty1:18	Flaherty1	elevated zero maze	(none)	total number fecal boli [n] boli 11818	inbred	8	both	8-9wks	N=20	2001

Gershenfeld1:18	Gershenfeld1	open field test	imipramine	number of fecal boli, 15 min test [n] defecation 16218 baseline imipramine 30mg/kg	inbred	12	m	5-10wks	N=5	2003

GMC03:8	GMC03	observation (SHIRPA)	(none)	defecation (0=present, 1=absent) [score] defecation 55221	inbred w/CC8	8	both	8-10wks	N=17	2018

JaxCC1:9025	JaxCC1	open field test	(none)	number of fecal boli, 20 min test [n] defecation_OF 89025	CC	18	both	7-9wks	N=7	2018

JaxCC1:9094	JaxCC1	light-dark box	(none)	fecal boli count, 20 min test [n] defecation_LD 89094	CC	18	both	8-10wks	N=7	2017

JaxKOMP-EAP:15	JaxKOMP-EAP	open field test	(none)	number of fecal boli, 20 min test [n] fecal_boli 100246	KOMP	1225	both	8wks	N=9	2021

JaxKOMP-EAP:141	JaxKOMP-EAP	observation (SHIRPA)	(none)	salivation salivation 100435 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:170	JaxKOMP-EAP	light-dark box	(none)	fecal boli count, 20 min test [n] defecation_LD fecal_boli_ld 100486	KOMP	1235	both	10wks	N=9	2021

JaxKOMP-LAP:15	JaxKOMP-LAP	open field test	(none)	number of fecal boli, 20 min test [n] fecal_boli 101246	KOMP	31	both	66-72wks	N=8	2021

JaxKOMP-LAP:130	JaxKOMP-LAP	observation (SHIRPA)	(none)	salivation salivation 101435 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:165	JaxKOMP-LAP	light-dark box	(none)	fecal boli count, 20 min test [n] defecation_LD fecal_boli_ld 101486	KOMP	32	both	67-73wks	N=8	2021

Jaxpheno7:12	Jaxpheno7	observation (SHIRPA)	(none)	number of fecal boli in view-jar [n] defecation_jar 34912	inbred	6	m	10wks	N=8	2010

Jaxpheno7:14	Jaxpheno7	observation (SHIRPA)	(none)	number of fecal boli in arena [n] defecation_arena 34914	inbred	6	m	10wks	N=8	2010

Jaxpheno7:27	Jaxpheno7	observation (SHIRPA)	(none)	salivation response when provoked with probe between teeth during supine restraint (score 0-2) [score] salivation 34927	inbred	6	m	10wks	N=8	2010

Koide3:15	Koide3	open field test	(none)	number of fecal boli, 10 min test [n] defecation 35915	wild-derived Mishima	12	both	10wks	N=10	2006

Kumar1:20	Kumar1	open field test	(none)	number of boli at end of open field test [n] FB1 29020	QTL population		both	10-14wks	N=122	2014

Lake2:4	Lake2	observation (SHIRPA)	(none)	number of fecal boli in view-jar [n] defecation_jar 21704	B6.A consomic w/par	23	both	8wks	N=8	2005

Lake2:8	Lake2	observation (SHIRPA)	(none)	number of fecal boli in arena [n] defecation_arena 21708	B6.A consomic w/par	23	both	8wks	N=8	2005

Lake3:3	Lake3	hole board test	(none)	number of fecal boli in 5 min test [n] defecation 19003	B6.A consomic w/par	23	both	8-9wks	N=8	2005

Schoenrock1:14	Schoenrock1	open field test	various diets	number of fecal boli, 10 min test [g] OF_boli 61214 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet	CC RIX	18	f	8-9wks	N=11	2018

Schoenrock1:30	Schoenrock1	light-dark box	various diets	number of fecal boli, 10 min test [n] LD_boli 61230 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet	CC RIX	18	f	8-9wks	N=11	2018

Schoenrock1:66	Schoenrock1	forced swim test	various diets	number of fecal boli, 6 min test [n] FST_boli 61266 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet	CC RIX	18	f	8-9wks	N=11	2018

Wahlsten1:32	Wahlsten1	open field test	(none)	number of fecal boli, within 5 min trial [n] defecation_OFT 10832	inbred	21	both	9wks	N=9	2003

Wahlsten1:51	Wahlsten1	elevated plus maze	(none)	number fecal boli, 5 min trial [n] defecation_EPM 10851	inbred	21	both	9wks	N=9	2003

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