MPD: Phenotype measures mapped to MP:0001663, abnormal digestive system physiology

Phenotype measures associated with ontology term
MP:0001663 'abnormal digestive system physiology'

All measures in this list are mapped to the ontology descendants of MP:0001663. None are mapped to MP:0001663 directly.

MP:0003303 peritoneal inflammation
MP:0005310 abnormal salivary gland physiology
MP:0010377 abnormal gut flora balance
MP:0020147 abnormal defecation amount

This MP term has been mapped to these MPD phenotype measurements to help users find relevant data. It should be noted that MPD measurements typically have a mixture of high-end, low-end and "normal" readings.

Sort/ Pick	Data set	Procedure / Protocol	Treatment	Phenotype Measure / Variable (click to view)	Panel	No. of Strains	Sex	Age	Sample Size (Avg)	Year
Brown1:10	Brown1	open field test	(none)	fecal boli count, 5 min test, day 1 [n] defecation_d1_OFT 9410	inbred	14	both	10wks	N=13	2004

Brown1:16	Brown1	light-dark box	(none)	fecal boli count [n] defecation_LD 9416	inbred	14	both	10wks	N=13	2004

Brown1:24	Brown1	elevated plus maze	(none)	fecal boli count [n] defecation_EPM 9424	inbred	14	both	10wks	N=13	2004

Brown1:32	Brown1	elevated zero maze	(none)	fecal boli count [n] defecation_EZM 9432	inbred	13	both	10wks	N=9	2004

Chesler2:41	Chesler2	open field test	(none)	number of fecal boli, 10 min test [n] fecal_boli_OFT 43461	CC diallel w/par	50	both	7-15wks	N=2	2011

Chesler2:48	Chesler2	light-dark box	(none)	number of fecal boli, 10 min test [n] fecal_boli_LD 43468	CC diallel w/par	50	both	7-15wks	N=2	2011

Chesler3:61	Chesler3	open field test	(none)	number of fecal boli, 10 min test [n] fecal_boli_OFT 43561	CC pre w/par	232	both	7-15wks	N=1	2011

Chesler3:68	Chesler3	light-dark box	(none)	number of fecal boli, 10 min test [n] fecal_boli_LD 43568	CC pre w/par	193	both	7-15wks	N=1	2011

Cowell1:2	Cowell1	in vitro assay	Staphylococcus aureus	log₁₀ bacterial colony count from peritoneal fluid 24h post-infection (x 10³) (CFU/mL) [log(n/mL)] peritoneal_CFU 49002	inbred	13	f	8wks	N=5	2012

Crusio1:12	Crusio1	open field test	(none)	number of fecal boli deposited, 20 min test [n] defec 62012	BXD w/par	55	both	10-12wks	N=8	2018

Flaherty1:18	Flaherty1	elevated zero maze	(none)	total number fecal boli [n] boli 11818	inbred	8	both	8-9wks	N=20	2001

Gershenfeld1:18	Gershenfeld1	open field test	imipramine	number of fecal boli, 15 min test [n] defecation 16218 baseline imipramine 30mg/kg	inbred	12	m	5-10wks	N=5	2003

GMC03:21	GMC03	observation (SHIRPA)	(none)	defecation (0=present, 1=absent) [score] defecation 55221	inbred w/CC8	8	both	8-10wks	N=17	2018

JaxCC1:9025	JaxCC1	open field test	(none)	number of fecal boli, 20 min test [n] defecation_OF 89025	CC	18	both	7-9wks	N=7	2018

JaxCC1:9094	JaxCC1	light-dark box	(none)	fecal boli count, 20 min test [n] defecation_LD 89094	CC	18	both	8-10wks	N=7	2017

JaxKOMP-EAP:15	JaxKOMP-EAP	open field test	(none)	number of fecal boli, 20 min test [n] fecal_boli 100246	KOMP	1225	both	8wks	N=9	2021

JaxKOMP-EAP:141	JaxKOMP-EAP	observation (SHIRPA)	(none)	salivation salivation 100435 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:170	JaxKOMP-EAP	light-dark box	(none)	fecal boli count, 20 min test [n] defecation_LD fecal_boli_ld 100486	KOMP	1235	both	10wks	N=9	2021

JaxKOMP-LAP:15	JaxKOMP-LAP	open field test	(none)	number of fecal boli, 20 min test [n] fecal_boli 101246	KOMP	31	both	66-72wks	N=8	2021

JaxKOMP-LAP:130	JaxKOMP-LAP	observation (SHIRPA)	(none)	salivation salivation 101435 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:165	JaxKOMP-LAP	light-dark box	(none)	fecal boli count, 20 min test [n] defecation_LD fecal_boli_ld 101486	KOMP	32	both	67-73wks	N=8	2021

Jaxpheno7:12	Jaxpheno7	observation (SHIRPA)	(none)	number of fecal boli in view-jar [n] defecation_jar 34912	inbred	6	m	10wks	N=8	2010

Jaxpheno7:14	Jaxpheno7	observation (SHIRPA)	(none)	number of fecal boli in arena [n] defecation_arena 34914	inbred	6	m	10wks	N=8	2010

Jaxpheno7:27	Jaxpheno7	observation (SHIRPA)	(none)	salivation response when provoked with probe between teeth during supine restraint (score 0-2) [score] salivation 34927	inbred	6	m	10wks	N=8	2010

Koide3:15	Koide3	open field test	(none)	number of fecal boli, 10 min test [n] defecation 35915	wild-derived Mishima	12	both	10wks	N=10	2006

Kumar1:20	Kumar1	open field test	(none)	number of boli at end of open field test [n] FB1 29020	QTL population		both	10-14wks	N=122	2014

Lake2:4	Lake2	observation (SHIRPA)	(none)	number of fecal boli in view-jar [n] defecation_jar 21704	B6.A consomic w/par	23	both	8wks	N=8	2005

Lake2:8	Lake2	observation (SHIRPA)	(none)	number of fecal boli in arena [n] defecation_arena 21708	B6.A consomic w/par	23	both	8wks	N=8	2005

Lake3:3	Lake3	hole board test	(none)	number of fecal boli in 5 min test [n] defecation 19003	B6.A consomic w/par	23	both	8-9wks	N=8	2005

Project1124:1	Project1124	16S rRNA Sequencing	cocaine	Acetatifactor [%] Acetatifactor 114961 pre pos	CC	44	both		N=1	2022

Project1124:4	Project1124	16S rRNA Sequencing	cocaine	Akkermansia [%] Akkermansia 114963 pre pos	CC	44	both		N=1	2022

Project1124:7	Project1124	16S rRNA Sequencing	cocaine	Alistipes [%] Alistipes 114965 pre pos	CC	44	both		N=1	2022

Project1124:10	Project1124	16S rRNA Sequencing	cocaine	Anaerostipes [%] Anaerostipes 114969 pre pos	CC	44	both		N=1	2022

Project1124:13	Project1124	16S rRNA Sequencing	cocaine	Anaeroplasma [%] Anaeroplasma 114967 pre pos	CC	44	both		N=1	2022

Project1124:16	Project1124	16S rRNA Sequencing	cocaine	Anaerotruncus [%] Anaerotruncus 114971 pre pos	CC	44	both		N=1	2022

Project1124:19	Project1124	16S rRNA Sequencing	cocaine	Anaerovorax [%] Anaerovorax 114973 pre pos	CC	44	both		N=1	2022

Project1124:22	Project1124	16S rRNA Sequencing	cocaine	Asaccharobacter [%] Asaccharobacter 114975 pre pos	CC	44	both		N=1	2022

Project1124:25	Project1124	16S rRNA Sequencing	cocaine	Barnesiella [%] Barnesiella 114977 pre pos	CC	44	both		N=1	2022

Project1124:28	Project1124	16S rRNA Sequencing	cocaine	Bifidobacterium [%] Bifidobacterium 114979 pre pos	CC	44	both		N=1	2022

Project1124:31	Project1124	16S rRNA Sequencing	cocaine	Blautia [%] Blautia 114981 pre pos	CC	44	both		N=1	2022

Project1124:34	Project1124	16S rRNA Sequencing	cocaine	Butyricicoccus [%] Butyricicoccus 114983 pre pos	CC	44	both		N=1	2022

Project1124:37	Project1124	16S rRNA Sequencing	cocaine	Butyrivibrio [%] Butyrivibrio 114985 pre pos	CC	44	both		N=1	2022

Project1124:40	Project1124	16S rRNA Sequencing	cocaine	Catabacter [%] Catabacter 114987 pre pos	CC	44	both		N=1	2022

Project1124:43	Project1124	16S rRNA Sequencing	cocaine	Clostridium_IV [%] Clostridium_IV 114989 pre pos	CC	44	both		N=1	2022

Project1124:46	Project1124	16S rRNA Sequencing	cocaine	Clostridium_sensu_stricto [%] Clostridium_sensu_stricto 114991 pre pos	CC	44	both		N=1	2022

Project1124:49	Project1124	16S rRNA Sequencing	cocaine	Clostridium_XlVa [%] Clostridium_XlVa 114993 pre pos	CC	44	both		N=1	2022

Project1124:52	Project1124	16S rRNA Sequencing	cocaine	Clostridium_XlVb [%] Clostridium_XlVb 114995 pre pos	CC	44	both		N=1	2022

Project1124:55	Project1124	16S rRNA Sequencing	cocaine	Clostridium_XVIII [%] Clostridium_XVIII 114997 pre pos	CC	44	both		N=1	2022

Project1124:58	Project1124	16S rRNA Sequencing	cocaine	Coprobacillus [%] Coprobacillus 114999 pos pre	CC	44	both		N=1	2022

Project1124:60	Project1124	16S rRNA Sequencing	cocaine	Coprococcus [%] Coprococcus 115001 pos pre	CC	44	both		N=1	2022

Project1124:62	Project1124	16S rRNA Sequencing	cocaine	Desulfonispora [%] Desulfonispora 115003 pos pre	CC	44	both		N=1	2022

Project1124:64	Project1124	16S rRNA Sequencing	cocaine	Dorea [%] Dorea 115005 pos pre	CC	44	both		N=1	2022

Project1124:66	Project1124	16S rRNA Sequencing	cocaine	Eisenbergiella [%] Eisenbergiella 115007 pos pre	CC	44	both		N=1	2022

Project1124:68	Project1124	16S rRNA Sequencing	cocaine	Enterococcus [%] Enterococcus 115009 pos pre	CC	44	both		N=1	2022

Project1124:70	Project1124	16S rRNA Sequencing	cocaine	Enterorhabdus [%] Enterorhabdus 115011 pos pre	CC	44	both		N=1	2022

Project1124:72	Project1124	16S rRNA Sequencing	cocaine	Erysipelotrichaceae_incertae_sedis [%] Erysipelotrichaceae_incertae_sedis 115013 pos pre	CC	44	both		N=1	2022

Project1124:74	Project1124	16S rRNA Sequencing	cocaine	Escherichia_Shigella [%] Escherichia_Shigella 115015 pos pre	CC	44	both		N=1	2022

Project1124:76	Project1124	16S rRNA Sequencing	cocaine	Flavonifractor [%] Flavonifractor 115017 pos pre	CC	44	both		N=1	2022

Project1124:78	Project1124	16S rRNA Sequencing	cocaine	Fusicatenibacter [%] Fusicatenibacter 115019 pos pre	CC	44	both		N=1	2022

Project1124:80	Project1124	16S rRNA Sequencing	cocaine	Holdemanella [%] Holdemanella 115021 pos pre	CC	44	both		N=1	2022

Project1124:82	Project1124	16S rRNA Sequencing	cocaine	Intestinimonas [%] Intestinimonas 115023 pos pre	CC	44	both		N=1	2022

Project1124:84	Project1124	16S rRNA Sequencing	cocaine	Klebsiella [%] Klebsiella 115025 pos pre	CC	44	both		N=1	2022

Project1124:86	Project1124	16S rRNA Sequencing	cocaine	Lachnospiracea_incertae_sedis [%] Lachnospiracea_incertae_sedis 115027 pos pre	CC	44	both		N=1	2022

Project1124:88	Project1124	16S rRNA Sequencing	cocaine	Lactobacillus [%] Lactobacillus 115029 pos pre	CC	44	both		N=1	2022

Project1124:90	Project1124	16S rRNA Sequencing	cocaine	Lactonifactor [%] Lactonifactor 115031 pos pre	CC	44	both		N=1	2022

Project1124:92	Project1124	16S rRNA Sequencing	cocaine	Marvinbryantia [%] Marvinbryantia 115033 pos pre	CC	44	both		N=1	2022

Project1124:94	Project1124	16S rRNA Sequencing	cocaine	Mobilitalea [%] Mobilitalea 115035 pos pre	CC	44	both		N=1	2022

Project1124:96	Project1124	16S rRNA Sequencing	cocaine	Murimonas [%] Murimonas 115037 pos pre	CC	44	both		N=1	2022

Project1124:98	Project1124	16S rRNA Sequencing	cocaine	Olsenella [%] Olsenella 115039 pos pre	CC	44	both		N=1	2022

Project1124:100	Project1124	16S rRNA Sequencing	cocaine	Oscillibacter [%] Oscillibacter 115041 pos pre	CC	44	both		N=1	2022

Project1124:102	Project1124	16S rRNA Sequencing	cocaine	Parabacteroides [%] Parabacteroides 115043 pos pre	CC	44	both		N=1	2022

Project1124:104	Project1124	16S rRNA Sequencing	cocaine	Parasutterella [%] Parasutterella 115045 pos pre	CC	44	both		N=1	2022

Project1124:106	Project1124	16S rRNA Sequencing	cocaine	Parvibacter [%] Parvibacter 115047 pos pre	CC	44	both		N=1	2022

Project1124:108	Project1124	16S rRNA Sequencing	cocaine	Propionibacterium [%] Propionibacterium 115049 pos pre	CC	44	both		N=1	2022

Project1124:110	Project1124	16S rRNA Sequencing	cocaine	Pseudoflavonifractor [%] Pseudoflavonifractor 115051 pos pre	CC	44	both		N=1	2022

Project1124:112	Project1124	16S rRNA Sequencing	cocaine	Robinsoniella [%] Robinsoniella 115053 pos pre	CC	44	both		N=1	2022

Project1124:114	Project1124	16S rRNA Sequencing	cocaine	Romboutsia [%] Romboutsia 115055 pos pre	CC	44	both		N=1	2022

Project1124:116	Project1124	16S rRNA Sequencing	cocaine	Roseburia [%] Roseburia 115057 pos pre	CC	44	both		N=1	2022

Project1124:118	Project1124	16S rRNA Sequencing	cocaine	Ruminococcus [%] Ruminococcus 115059 pos pre	CC	44	both		N=1	2022

Project1124:120	Project1124	16S rRNA Sequencing	cocaine	Ruminococcus2 [%] Ruminococcus2 115061 pos pre	CC	44	both		N=1	2022

Project1124:122	Project1124	16S rRNA Sequencing	cocaine	Saccharibacteria_genera_incertae_sedis [%] Saccharibacteria_genera_incertae_sedis 115063 pos pre	CC	44	both		N=1	2022

Project1124:124	Project1124	16S rRNA Sequencing	cocaine	Staphylococcus [%] Staphylococcus 115065 pos pre	CC	44	both		N=1	2022

Project1124:126	Project1124	16S rRNA Sequencing	cocaine	Syntrophococcus [%] Syntrophococcus 115067 pos pre	CC	44	both		N=1	2022

Project1124:128	Project1124	16S rRNA Sequencing	cocaine	Turicibacter [%] Turicibacter 115069 pos pre	CC	44	both		N=1	2022

Project1124:130	Project1124	16S rRNA Sequencing	cocaine	unclassified_Bacilli [%] unclassified_Bacilli 115071 pos pre	CC	44	both		N=1	2022

Project1124:132	Project1124	16S rRNA Sequencing	cocaine	unclassified_Bacteria [%] unclassified_Bacteria 115073 pos pre	CC	44	both		N=1	2022

Project1124:134	Project1124	16S rRNA Sequencing	cocaine	unclassified_Bacteroidales [%] unclassified_Bacteroidales 115075 pos pre	CC	44	both		N=1	2022

Project1124:136	Project1124	16S rRNA Sequencing	cocaine	unclassified_Clostridiales [%] unclassified_Clostridiales 115077 pos pre	CC	44	both		N=1	2022

Project1124:138	Project1124	16S rRNA Sequencing	cocaine	unclassified_Coriobacteriaceae [%] unclassified_Coriobacteriaceae 115079 pos pre	CC	44	both		N=1	2022

Project1124:140	Project1124	16S rRNA Sequencing	cocaine	unclassified_Erysipelotrichaceae [%] unclassified_Erysipelotrichaceae 115081 pos pre	CC	44	both		N=1	2022

Project1124:142	Project1124	16S rRNA Sequencing	cocaine	unclassified_Firmicutes [%] unclassified_Firmicutes 115083 pos pre	CC	44	both		N=1	2022

Project1124:144	Project1124	16S rRNA Sequencing	cocaine	unclassified_Lachnospiraceae [%] unclassified_Lachnospiraceae 115085 pos pre	CC	44	both		N=1	2022

Project1124:146	Project1124	16S rRNA Sequencing	cocaine	unclassified_Porphyromonadaceae [%] unclassified_Porphyromonadaceae 115087 pos pre	CC	44	both		N=1	2022

Project1124:148	Project1124	16S rRNA Sequencing	cocaine	unclassified_Ruminococcaceae [%] unclassified_Ruminococcaceae 115089 pos pre	CC	44	both		N=1	2022

Schoenrock1:14	Schoenrock1	open field test	various diets	number of fecal boli, 10 min test [g] OF_boli 61214 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet	CC RIX	18	f	8-9wks	N=11	2018

Schoenrock1:30	Schoenrock1	light-dark box	various diets	number of fecal boli, 10 min test [n] LD_boli 61230 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet	CC RIX	18	f	8-9wks	N=11	2018

Schoenrock1:66	Schoenrock1	forced swim test	various diets	number of fecal boli, 6 min test [n] FST_boli 61266 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet	CC RIX	18	f	8-9wks	N=11	2018

Wahlsten1:32	Wahlsten1	open field test	(none)	number of fecal boli, within 5 min trial [n] defecation_OFT 10832	inbred	21	both	9wks	N=9	2003

Wahlsten1:51	Wahlsten1	elevated plus maze	(none)	number fecal boli, 5 min trial [n] defecation_EPM 10851	inbred	21	both	9wks	N=9	2003

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