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Project measure / variable:   Crusio1   defec

ID, description, units MPD:62012   defec   number of fecal boli deposited, 20 min test   [n]  
Data set, strains Crusio1   BXD w/par   55 strains     sex: both     age: 10-12wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Crusio1 - number of fecal boli deposited, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested54 strains55 strains
Mean of the strain means3.0349   n 4.2167   n
Median of the strain means2.85   n 3.6   n
SD of the strain means± 1.8897 ± 2.2223
Coefficient of variation (CV)0.6227 0.527
Min–max range of strain means0.0   –   8.1   n 0.0   –   10.0   n
Mean sample size per strain8.4   mice 8.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 281.3922 281.3922 39.0474 < 0.0001
strain 52 3055.6137 58.7618 8.1541 < 0.0001
sex:strain 52 660.1274 12.6948 1.7616 0.001
Residuals 804 5793.9667 7.2064


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 f 1.5 2.1213   2   1.5 1.4142 -0.81
BXD1 m 7.0 1.4142   2   1.0 0.202 6.0, 8.0 1.25
BXD100 f 8.1 3.7845   10 1.1968 0.4672 2.0, 13.0 2.68
BXD100 m 6.9 2.6854   10 0.84918 0.3892 3.0, 10.0 1.21
BXD101 f 4.0 3.5214   6 1.4376 0.8803 0.51
BXD101 m 3.0 2.0702   8 0.73193 0.6901 -0.55
BXD102 f 0.5 1.5811   10 0.5 3.1623 -1.34
BXD102 m 3.1 2.4698   10 0.78102 0.7967 -0.5
BXD11 f 6.2 2.4404   10 0.77172 0.3936 3.0, 11.0 1.67
BXD11 m 4.9 1.6633   10 0.52599 0.3395 3.0, 9.0 0.31
BXD13 f 1.9 1.2867   10 0.40689 0.6772 -0.6
BXD13 m 2.1 1.6633   10 0.52599 0.7921 -0.95
BXD14 f 1.2 1.5492   10 0.4899 1.291 -0.97
BXD14 m 1.8 2.044   10 0.64636 1.1355 -1.09
BXD15 f 3.5 3.504   10 1.1081 1.0011 0.25
BXD15 m 3.6 2.5033   10 0.79162 0.6954 -0.28
BXD16 f 7.4 2.5906   10 0.81921 0.3501 4.0, 12.0 2.31
BXD16 m 8.5 2.2236   10 0.70317 0.2616 5.0, 11.0 1.93
BXD18 f 2.0 2.8284   2   2.0 1.4142 -0.55
BXD18 m 5.0 4.2426   2   3.0 0.8485 2.0, 8.0 0.35
BXD19 f 5.5 2.1213   2   1.5 0.3857 4.0, 7.0 1.3
BXD19 m 8.0 0.0   2   0.0 0.0 8.0, 8.0 1.7
BXD2 f 3.0 2.7889   10 0.88192 0.9296 -0.02
BXD2 m 5.1 1.8529   10 0.58595 0.3633 2.0, 9.0 0.4
BXD21 f 3.3 3.2677   10 1.0333 0.9902 0.14
BXD21 m 5.7 3.5292   10 1.116 0.6192 0.67
BXD27 f 6.5 4.4783   10 1.4162 0.689 1.0, 16.0 1.83
BXD27 m 6.5 4.2753   10 1.352 0.6577 2.0, 17.0 1.03
BXD28 f 5.0 2.4037   10 0.76012 0.4807 1.0, 8.0 1.04
BXD28 m 2.3 2.8304   10 0.89505 1.2306 -0.86
BXD31 f 3.3 3.335   10 1.0546 1.0106 0.14
BXD31 m 5.6 1.6465   10 0.52068 0.294 3.0, 8.0 0.62
BXD32 f 5.3 3.401   10 1.0755 0.6417 1.0, 12.0 1.2
BXD32 m 10.0 1.9437   10 0.61464 0.1944 6.0, 13.0 2.6
BXD33 f 0.0 0.0   1   0.0 None -1.61
BXD33 m 3.0 0.0   1   0.0 0.0 3.0, 3.0 -0.55
BXD34 f 5.0 1.4142   2   1.0 0.2828 4.0, 6.0 1.04
BXD34 m 4.0 2.8284   2   2.0 0.7071 2.0, 6.0 -0.1
BXD39 f 3.7 2.9458   10 0.93155 0.7962 1.0, 9.0 0.35
BXD39 m 6.4 1.8379   10 0.58119 0.2872 4.0, 9.0 0.98
BXD40 f 1.6 2.0111   10 0.63596 1.2569 -0.76
BXD40 m 4.4 2.7968   10 0.88443 0.6356 0.08
BXD42 f 2.9 1.6633   10 0.52599 0.5736 -0.07
BXD42 m 2.1 1.8529   10 0.58595 0.8823 -0.95
BXD43 f 2.6 3.2728   10 1.0349 1.2588 -0.23
BXD43 m 2.3 3.4335   10 1.0858 1.4928 -0.86
BXD44 f 2.8 2.3476   10 0.74237 0.8384 -0.12
BXD44 m 6.0 4.1899   10 1.325 0.6983 0.8
BXD48 f 1.0 1.6997   10 0.53748 1.6997 -1.08
BXD48 m 2.8 2.201   10 0.69602 0.7861 -0.64
BXD49 f 0.1 0.31623   10 0.1 3.1623 -1.55
BXD49 m 3.5 3.3082   10 1.0462 0.9452 -0.32
BXD50 f 1.9 1.4491   10 0.45826 0.7627 -0.6
BXD50 m 3.1 2.2828   10 0.72188 0.7364 -0.5
BXD51 f 1.3 2.406   10 0.76085 1.8508 -0.92
BXD51 m 0.5 1.0801   10 0.34157 2.1602 -1.67
BXD6 f 3.8 1.7512   10 0.55377 0.4608 0.4
BXD6 m 5.7 3.6225   10 1.1455 0.6355 0.67
BXD61 f 1.3 1.567   10 0.49554 1.2054 -0.92
BXD61 m 1.7 1.9465   10 0.61554 1.145 -1.13
BXD62 f 3.5 2.8382   10 0.89753 0.8109 0.25
BXD62 m 3.4 2.4129   10 0.76303 0.7097 -0.37
BXD65 f 0.83333 2.0412   6 0.83333 2.4495 -1.17
BXD65 m 3.3 2.4967   10 0.78951 0.7566 -0.41
BXD66 f 4.75 3.4034   4 1.7017 0.7165 2.0, 9.0 0.91
BXD66 m 6.0 2.1602   4 1.0801 0.36 3.0, 8.0 0.8
BXD68 f 0.75 1.5   4 0.75 2.0 -1.21
BXD68 m 2.0 2.5298   6 1.0328 1.2649 -1.0
BXD69 f 1.5 2.5055   10 0.79232 1.6704 -0.81
BXD69 m 5.4 3.5653   10 1.1274 0.6602 0.53
BXD70 f 1.9 1.8529   10 0.58595 0.9752 -0.6
BXD70 m 2.6 2.0111   10 0.63596 0.7735 -0.73
BXD71 m 0.0 0.0   2   0.0 None -1.9
BXD73 f 2.5 1.7159   10 0.54263 0.6864 -0.28
BXD73 m 3.2 1.6193   10 0.51208 0.506 -0.46
BXD75 f 5.1 3.6652   10 1.159 0.7187 1.09
BXD75 m 4.3 3.401   10 1.0755 0.7909 0.04
BXD77 f 1.75 3.5   4 1.75 2.0 -0.68
BXD77 m 4.25 2.8723   4 1.4361 0.6758 1.0, 8.0 0.01
BXD8 f 6.9 4.5326   10 1.4333 0.6569 2.0, 13.0 2.05
BXD8 m 9.4 1.7764   10 0.56174 0.189 6.0, 12.0 2.33
BXD80 f 2.5 2.5927   10 0.81989 1.0371 -0.28
BXD80 m 4.3 1.2517   10 0.39581 0.2911 2.0, 6.0 0.04
BXD81 f 1.6 2.319   10 0.73333 1.4494 -0.76
BXD81 m 2.0 2.582   10 0.8165 1.291 -1.0
BXD84 f 2.4 1.8974   10 0.6 0.7906 -0.34
BXD84 m 2.2 2.5734   10 0.81377 1.1697 -0.91
BXD85 f 4.0 1.4142   4 0.70711 0.3536 2.0, 5.0 0.51
BXD85 m 6.0 2.8284   4 1.4142 0.4714 4.0, 10.0 0.8
BXD86 f 4.0 3.6818   10 1.1643 0.9204 0.51
BXD86 m 2.2 2.7809   10 0.87939 1.264 -0.91
BXD87 f 3.6 2.1705   10 0.68638 0.6029 0.3
BXD87 m 5.3 2.4518   10 0.77531 0.4626 2.0, 10.0 0.49
BXD89 f 1.7 2.406   10 0.76085 1.4153 -0.71
BXD89 m 3.3 2.7101   10 0.857 0.8212 -0.41
BXD90 f 2.3333 3.4448   6 1.4063 1.4763 -0.37
BXD90 m 2.5 2.1679   6 0.88506 0.8672 -0.77
BXD92 f 0.5 0.70711   2   0.5 1.4142 -1.34
BXD92 m 1.6667 1.1547   3 0.66667 0.6928 1.0, 3.0 -1.15
BXD96 f 3.4 3.4705   10 1.0975 1.0207 0.19
BXD96 m 7.4 3.2728   10 1.0349 0.4423 1.43
BXD97 f 4.0 3.1269   10 0.98883 0.7817 0.51
BXD97 m 5.4 4.9486   10 1.5649 0.9164 0.53
BXD98 f 3.6667 2.2509   6 0.91894 0.6139 1.0, 6.0 0.33
BXD98 m 3.0 2.582   7 0.9759 0.8607 -0.55
C57BL/6J f 1.6 2.4129   10 0.76303 1.5081 -0.76
C57BL/6J m 1.5 2.1213   10 0.67082 1.4142 -1.22
DBA/2J f 2.9 3.4785   10 1.1 1.1995 -0.07
DBA/2J m 6.7 2.5408   10 0.80346 0.3792 2.0, 10.0 1.12


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 f 1.5 1.8982 5.226 -2.226
BXD1 m 7.0 1.8982 10.726 3.274
BXD100 f 8.1 0.8489 9.7663 6.4337
BXD100 m 6.9 0.8489 8.5663 5.2337
BXD101 f 4.0 1.0959 6.1512 1.8488
BXD101 m 3.0 0.9491 4.863 1.137
BXD102 f 0.5 0.8489 2.1663 -1.1663
BXD102 m 3.1 0.8489 4.7663 1.4337
BXD11 f 6.2 0.8489 7.8663 4.5337
BXD11 m 4.9 0.8489 6.5663 3.2337
BXD13 f 1.9 0.8489 3.5663 0.2337
BXD13 m 2.1 0.8489 3.7663 0.4337
BXD14 f 1.2 0.8489 2.8663 -0.4663
BXD14 m 1.8 0.8489 3.4663 0.1337
BXD15 f 3.5 0.8489 5.1663 1.8337
BXD15 m 3.6 0.8489 5.2663 1.9337
BXD16 f 7.4 0.8489 9.0663 5.7337
BXD16 m 8.5 0.8489 10.1663 6.8337
BXD18 f 2.0 1.8982 5.726 -1.726
BXD18 m 5.0 1.8982 8.726 1.274
BXD19 f 5.5 1.8982 9.226 1.774
BXD19 m 8.0 1.8982 11.726 4.274
BXD2 f 3.0 0.8489 4.6663 1.3337
BXD2 m 5.1 0.8489 6.7663 3.4337
BXD21 f 3.3 0.8489 4.9663 1.6337
BXD21 m 5.7 0.8489 7.3663 4.0337
BXD27 f 6.5 0.8489 8.1663 4.8337
BXD27 m 6.5 0.8489 8.1663 4.8337
BXD28 f 5.0 0.8489 6.6663 3.3337
BXD28 m 2.3 0.8489 3.9663 0.6337
BXD31 f 3.3 0.8489 4.9663 1.6337
BXD31 m 5.6 0.8489 7.2663 3.9337
BXD32 f 5.3 0.8489 6.9663 3.6337
BXD32 m 10.0 0.8489 11.6663 8.3337
BXD34 f 5.0 1.8982 8.726 1.274
BXD34 m 4.0 1.8982 7.726 0.274
BXD39 f 3.7 0.8489 5.3663 2.0337
BXD39 m 6.4 0.8489 8.0663 4.7337
BXD40 f 1.6 0.8489 3.2663 -0.0663
BXD40 m 4.4 0.8489 6.0663 2.7337
BXD42 f 2.9 0.8489 4.5663 1.2337
BXD42 m 2.1 0.8489 3.7663 0.4337
BXD43 f 2.6 0.8489 4.2663 0.9337
BXD43 m 2.3 0.8489 3.9663 0.6337
BXD44 f 2.8 0.8489 4.4663 1.1337
BXD44 m 6.0 0.8489 7.6663 4.3337
BXD48 f 1.0 0.8489 2.6663 -0.6663
BXD48 m 2.8 0.8489 4.4663 1.1337
BXD49 f 0.1 0.8489 1.7663 -1.5663
BXD49 m 3.5 0.8489 5.1663 1.8337
BXD50 f 1.9 0.8489 3.5663 0.2337
BXD50 m 3.1 0.8489 4.7663 1.4337
BXD51 f 1.3 0.8489 2.9663 -0.3663
BXD51 m 0.5 0.8489 2.1663 -1.1663
BXD6 f 3.8 0.8489 5.4663 2.1337
BXD6 m 5.7 0.8489 7.3663 4.0337
BXD61 f 1.3 0.8489 2.9663 -0.3663
BXD61 m 1.7 0.8489 3.3663 0.0337
BXD62 f 3.5 0.8489 5.1663 1.8337
BXD62 m 3.4 0.8489 5.0663 1.7337
BXD65 f 0.8333 1.0959 2.9846 -1.3179
BXD65 m 3.3 0.8489 4.9663 1.6337
BXD66 f 4.75 1.3422 7.3847 2.1153
BXD66 m 6.0 1.3422 8.6347 3.3653
BXD68 f 0.75 1.3422 3.3847 -1.8847
BXD68 m 2.0 1.0959 4.1512 -0.1512
BXD69 f 1.5 0.8489 3.1663 -0.1663
BXD69 m 5.4 0.8489 7.0663 3.7337
BXD70 f 1.9 0.8489 3.5663 0.2337
BXD70 m 2.6 0.8489 4.2663 0.9337
BXD73 f 2.5 0.8489 4.1663 0.8337
BXD73 m 3.2 0.8489 4.8663 1.5337
BXD75 f 5.1 0.8489 6.7663 3.4337
BXD75 m 4.3 0.8489 5.9663 2.6337
BXD77 f 1.75 1.3422 4.3847 -0.8847
BXD77 m 4.25 1.3422 6.8847 1.6153
BXD8 f 6.9 0.8489 8.5663 5.2337
BXD8 m 9.4 0.8489 11.0663 7.7337
BXD80 f 2.5 0.8489 4.1663 0.8337
BXD80 m 4.3 0.8489 5.9663 2.6337
BXD81 f 1.6 0.8489 3.2663 -0.0663
BXD81 m 2.0 0.8489 3.6663 0.3337
BXD84 f 2.4 0.8489 4.0663 0.7337
BXD84 m 2.2 0.8489 3.8663 0.5337
BXD85 f 4.0 1.3422 6.6347 1.3653
BXD85 m 6.0 1.3422 8.6347 3.3653
BXD86 f 4.0 0.8489 5.6663 2.3337
BXD86 m 2.2 0.8489 3.8663 0.5337
BXD87 f 3.6 0.8489 5.2663 1.9337
BXD87 m 5.3 0.8489 6.9663 3.6337
BXD89 f 1.7 0.8489 3.3663 0.0337
BXD89 m 3.3 0.8489 4.9663 1.6337
BXD90 f 2.3333 1.0959 4.4846 0.1821
BXD90 m 2.5 1.0959 4.6512 0.3488
BXD92 f 0.5 1.8982 4.226 -3.226
BXD92 m 1.6667 1.5499 4.709 -1.3756
BXD96 f 3.4 0.8489 5.0663 1.7337
BXD96 m 7.4 0.8489 9.0663 5.7337
BXD97 f 4.0 0.8489 5.6663 2.3337
BXD97 m 5.4 0.8489 7.0663 3.7337
BXD98 f 3.6667 1.0959 5.8179 1.5154
BXD98 m 3.0 1.0146 4.9917 1.0083
C57BL/6J f 1.6 0.8489 3.2663 -0.0663
C57BL/6J m 1.5 0.8489 3.1663 -0.1663
DBA/2J f 2.9 0.8489 4.5663 1.2337
DBA/2J m 6.7 0.8489 8.3663 5.0337


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BXD1 both 4.25 1.3422 6.8847 1.6153
BXD100 both 7.5 0.6003 8.6783 6.3217
BXD101 both 3.5 0.7249 4.9229 2.0771
BXD102 both 1.8 0.6003 2.9783 0.6217
BXD11 both 5.55 0.6003 6.7283 4.3717
BXD13 both 2.0 0.6003 3.1783 0.8217
BXD14 both 1.5 0.6003 2.6783 0.3217
BXD15 both 3.55 0.6003 4.7283 2.3717
BXD16 both 7.95 0.6003 9.1283 6.7717
BXD18 both 3.5 1.3422 6.1347 0.8653
BXD19 both 6.75 1.3422 9.3847 4.1153
BXD2 both 4.05 0.6003 5.2283 2.8717
BXD21 both 4.5 0.6003 5.6783 3.3217
BXD27 both 6.5 0.6003 7.6783 5.3217
BXD28 both 3.65 0.6003 4.8283 2.4717
BXD31 both 4.45 0.6003 5.6283 3.2717
BXD32 both 7.65 0.6003 8.8283 6.4717
BXD34 both 4.5 1.3422 7.1347 1.8653
BXD39 both 5.05 0.6003 6.2283 3.8717
BXD40 both 3.0 0.6003 4.1783 1.8217
BXD42 both 2.5 0.6003 3.6783 1.3217
BXD43 both 2.45 0.6003 3.6283 1.2717
BXD44 both 4.4 0.6003 5.5783 3.2217
BXD48 both 1.9 0.6003 3.0783 0.7217
BXD49 both 1.8 0.6003 2.9783 0.6217
BXD50 both 2.5 0.6003 3.6783 1.3217
BXD51 both 0.9 0.6003 2.0783 -0.2783
BXD6 both 4.75 0.6003 5.9283 3.5717
BXD61 both 1.5 0.6003 2.6783 0.3217
BXD62 both 3.45 0.6003 4.6283 2.2717
BXD65 both 2.0667 0.6931 3.4272 0.7061
BXD66 both 5.375 0.9491 7.238 3.512
BXD68 both 1.375 0.8664 3.0757 -0.3257
BXD69 both 3.45 0.6003 4.6283 2.2717
BXD70 both 2.25 0.6003 3.4283 1.0717
BXD73 both 2.85 0.6003 4.0283 1.6717
BXD75 both 4.7 0.6003 5.8783 3.5217
BXD77 both 3.0 0.9491 4.863 1.137
BXD8 both 8.15 0.6003 9.3283 6.9717
BXD80 both 3.4 0.6003 4.5783 2.2217
BXD81 both 1.8 0.6003 2.9783 0.6217
BXD84 both 2.3 0.6003 3.4783 1.1217
BXD85 both 5.0 0.9491 6.863 3.137
BXD86 both 3.1 0.6003 4.2783 1.9217
BXD87 both 4.45 0.6003 5.6283 3.2717
BXD89 both 2.5 0.6003 3.6783 1.3217
BXD90 both 2.4167 0.7749 3.9378 0.8955
BXD92 both 1.0833 1.2253 3.4885 -1.3218
BXD96 both 5.4 0.6003 6.5783 4.2217
BXD97 both 4.7 0.6003 5.8783 3.5217
BXD98 both 3.3333 0.7468 4.7991 1.8675
C57BL/6J both 1.55 0.6003 2.7283 0.3717
DBA/2J both 4.8 0.6003 5.9783 3.6217




  GWAS USING LINEAR MIXED MODELS