Phenotype measure:   Chesler2   fecal_boli_LD

ID, description, units MPD:43468   fecal_boli_LD   number of fecal boli, 10 min test   [n]
Data set, strains Chesler2   CC diallel w/par   39 strains     sex: both     age: 7-15wks
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  STRAIN COMPARISON PLOT
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Chesler2 - number of fecal boli, 10 min test



  8-WAY DIALLEL CROSS VIEW
Female animals
129S ♂ A ♂ B6 ♂ CAST ♂ NOD ♂ NZO ♂ PWK ♂ WSB ♂
129S ♀ 9.00 4.00 2.33 3.00 4.00 5.75 3.50
A ♀ 1.50
B6 ♀ 3.00 2.50 1.33 3.50
CAST ♀ 8.00 3.33 6.00 11.0
NOD ♀ 2.40 3.00 1.00
NZO ♀ 5.50 5.00 6.00 3.00
PWK ♀ 4.00 4.50 4.00
WSB ♀ 2.00 9.00 6.00 4.00 3.33 6.00 6.50

Male animals
129S ♂ A ♂ B6 ♂ CAST ♂ NOD ♂ NZO ♂ PWK ♂ WSB ♂
129S ♀ 2.00 1.50 7.00 3.00 5.00 7.50
A ♀ 1.00 9.00 0.200 7.00 3.00
B6 ♀ 2.00 4.50 5.00
CAST ♀ 6.00 7.00 5.00 9.00 8.00 6.50 5.00
NOD ♀ 7.00 5.50 0.333
NZO ♀ 2.00 1.00 0.500
PWK ♀ 5.00 6.00 4.00
WSB ♀ 3.50 2.67 8.67 3.50 6.00

Cell coloring is based on strain mean Z-scores.     High-end         Mid         Low-end           Mouse over the cells to see additional info.


  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested39 strains39 strains
Mean of the strain means3.77   n 4.10   n
Median of the strain means3.50   n 4.50   n
SD of the strain means± 2.70 ± 2.84
Coefficient of variation (CV)0.717 0.692
Min–max range of strain means0   –   11.0   n 0   –   9.00   n
Mean sample size per strain2.1   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 3.6169 3.6169 0.5672 0.4555
strain 9 146.8276 16.3142 2.5584 0.0188
sex:strain 9 85.0698 9.4522 1.4823 0.1853
Residuals 43 274.2 6.3767


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 9.0 0.0   1   0.0 0.0 9.0, 9.0 1.94
129SAF1 f 4.0 0.0   2   0.0 0.0 4.0, 4.0 0.09
129SAF1 m 2.0 1.73   3 1.0 0.866 -0.74
129SB6F1 f 2.33 0.577   3 0.333 0.247 2.0, 3.0 -0.53
129SB6F1 m 1.5 1.73   4 0.866 1.15 -0.92
129SCASTF1 f 3.0 2.83   2   2.0 0.943 1.0, 5.0 -0.28
129SCASTF1 m 7.0 0.0   1   0.0 0.0 7.0, 7.0 1.02
129SNODF1 f 0.0 0.0   1   0.0 0.0 -1.4
129SNODF1 m 0.0 0.0   2   0.0 0.0 -1.44
129SNZOF1 f 4.0 0.0   1   0.0 0.0 4.0, 4.0 0.09
129SNZOF1 m 3.0 4.24   2   3.0 1.41 -0.39
129SPWKF1 f 5.75 0.957   4 0.479 0.167 5.0, 7.0 0.73
129SPWKF1 m 5.0 0.0   1   0.0 0.0 5.0, 5.0 0.32
129SWSBF1 f 3.5 2.52   4 1.26 0.719 -0.1
129SWSBF1 m 7.5 0.707   2   0.5 0.0943 7.0, 8.0 1.2
AB6F1 f 0.0 0.0   1   0.0 0.0 -1.4
AB6F1 m 1.0 1.0   3 0.577 1.0 -1.09
ACASTF1 m 9.0 0.0   1   0.0 0.0 9.0, 9.0 1.73
ANODF1 m 0.2 0.447   5 0.2 2.24 -1.37
ANZOF1 f 1.5 2.12   2   1.5 1.41 -0.84
APWKF1 m 7.0 0.0   1   0.0 0.0 7.0, 7.0 1.02
AWSBF1 m 3.0 0.0   1   0.0 0.0 3.0, 3.0 -0.39
B6129SF1/J f 0.0 0.0   2   0.0 0.0 -1.4
B6AF1/J f 3.0 0.0   1   0.0 0.0 3.0, 3.0 -0.28
B6AF1/J m 2.0 2.83   2   2.0 1.41 -0.74
B6CASTF1 m 4.5 0.707   2   0.5 0.157 4.0, 5.0 0.14
B6NODF1 f 2.5 3.54   2   2.5 1.41 -0.47
B6NODF1 m 0.0 0.0   1   0.0 0.0 -1.44
B6NZOF1 f 1.33 2.31   3 1.33 1.73 -0.9
B6NZOF1 m 5.0 1.41   2   1.0 0.283 4.0, 6.0 0.32
B6PWKF1 f 3.5 2.12   2   1.5 0.606 2.0, 5.0 -0.1
CAST129SF1 m 6.0 1.0   3 0.577 0.167 5.0, 7.0 0.67
CASTAF1 f 8.0 0.0   1   0.0 0.0 8.0, 8.0 1.57
CASTAF1 m 7.0 0.0   2   0.0 0.0 7.0, 7.0 1.02
CASTB6F1 f 0.0 0.0   1   0.0 0.0 -1.4
CASTB6F1 m 5.0 1.73   3 1.0 0.346 3.0, 6.0 0.32
CASTNODF1 m 9.0 2.65   3 1.53 0.294 6.0, 11.0 1.73
CASTNZOF1 f 3.33 0.577   3 0.333 0.173 3.0, 4.0 -0.16
CASTNZOF1 m 8.0 0.0   1   0.0 0.0 8.0, 8.0 1.37
CASTPWKF1 f 6.0 1.0   5 0.447 0.167 5.0, 7.0 0.83
CASTPWKF1 m 6.5 2.07   6 0.847 0.319 4.0, 10.0 0.85
CASTWSBF1 f 11.0 4.24   2   3.0 0.386 8.0, 14.0 2.68
CASTWSBF1 m 5.0 0.0   1   0.0 0.0 5.0, 5.0 0.32
NOD129SF1 m 0.0 0.0   1   0.0 0.0 -1.44
NODAF1 f 0.0 0.0   1   0.0 0.0 -1.4
NODAF1 m 7.0 0.0   1   0.0 0.0 7.0, 7.0 1.02
NODB6F1 f 0.0 0.0   1   0.0 0.0 -1.4
NODB6F1 m 0.0 0.0   1   0.0 0.0 -1.44
NODCASTF1 f 2.4 2.3   5 1.03 0.959 -0.51
NODCASTF1 m 5.5 2.12   2   1.5 0.386 4.0, 7.0 0.49
NODNZOF1 f 3.0 1.41   2   1.0 0.471 2.0, 4.0 -0.28
NODNZOF1 m 0.333 0.577   3 0.333 1.73 -1.33
NODPWKF1 f 1.0 0.0   1   0.0 0.0 1.0, 1.0 -1.03
NZO129SF1 f 5.5 0.707   2   0.5 0.129 5.0, 6.0 0.64
NZO129SF1 m 2.0 0.0   1   0.0 0.0 2.0, 2.0 -0.74
NZOAF1 f 5.0 4.36   3 2.52 0.872 2.0, 10.0 0.46
NZOB6F1 m 1.0 0.0   1   0.0 0.0 1.0, 1.0 -1.09
NZONODF1 f 6.0 0.0   1   0.0 0.0 6.0, 6.0 0.83
NZONODF1 m 0.5 0.707   2   0.5 1.41 -1.27
NZOWSBF1 f 3.0 3.0   3 1.73 1.0 -0.28
PWK129SF1 f 4.0 1.83   4 0.913 0.456 2.0, 6.0 0.09
PWKAF1 f 4.5 2.12   2   1.5 0.471 3.0, 6.0 0.27
PWKAF1 m 5.0 0.0   2   0.0 0.0 5.0, 5.0 0.32
PWKB6F1 m 6.0 4.24   2   3.0 0.707 3.0, 9.0 0.67
PWKNODF1 f 4.0 0.0   1   0.0 0.0 4.0, 4.0 0.09
PWKNODF1 m 4.0 0.0   2   0.0 0.0 4.0, 4.0 -0.03
WSB129SF1 f 2.0 3.46   3 2.0 1.73 -0.65
WSBAF1 f 9.0 0.0   1   0.0 0.0 9.0, 9.0 1.94
WSBAF1 m 3.5 3.54   2   2.5 1.01 1.0, 6.0 -0.21
WSBB6F1 f 6.0 8.49   2   6.0 1.41 0.83
WSBB6F1 m 2.67 2.52   3 1.45 0.944 -0.5
WSBCASTF1 m 8.67 3.21   3 1.86 0.371 5.0, 11.0 1.61
WSB/EiJ f 6.5 6.36   2   4.5 0.979 2.0, 11.0 1.01
WSBNODF1 f 4.0 0.0   1   0.0 0.0 4.0, 4.0 0.09
WSBNODF1 m 3.5 4.95   2   3.5 1.41 -0.21
WSBNZOF1 f 3.33 2.58   6 1.05 0.775 -0.16
WSBNZOF1 m 6.0 7.07   2   5.0 1.18 1.0, 11.0 0.67
WSBPWKF1 f 6.0 0.0   2   0.0 0.0 6.0, 6.0 0.83


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129SAF1 f 4.0 1.7856 7.601 0.399
129SAF1 m 2.0 1.4579 4.9402 0.0
129SB6F1 f 2.3333 1.4579 5.2735 0.0
129SB6F1 m 1.5 1.2626 4.0463 0.0
129SWSBF1 f 3.5 1.2626 6.0463 0.9537
129SWSBF1 m 7.5 1.7856 11.101 3.899
B6NZOF1 f 1.3333 1.4579 4.2735 0.0
B6NZOF1 m 5.0 1.7856 8.601 1.399
CASTPWKF1 f 6.0 1.1293 8.2775 3.7225
CASTPWKF1 m 6.5 1.0309 8.579 4.421
NODCASTF1 f 2.4 1.1293 4.6775 0.1225
NODCASTF1 m 5.5 1.7856 9.101 1.899
NODNZOF1 f 3.0 1.7856 6.601 0.0
NODNZOF1 m 0.3333 1.4579 3.2735 0.0
PWKAF1 f 4.5 1.7856 8.101 0.899
PWKAF1 m 5.0 1.7856 8.601 1.399
WSBB6F1 f 6.0 1.7856 9.601 2.399
WSBB6F1 m 2.6667 1.4579 5.6069 0.0
WSBNZOF1 f 3.3333 1.0309 5.4124 1.2543
WSBNZOF1 m 6.0 1.7856 9.601 2.399


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129SAF1 both 3.0 1.1526 5.3244 0.6756
129SB6F1 both 1.9167 0.9643 3.8614 0.0
129SWSBF1 both 5.5 1.0935 7.7052 3.2948
B6NZOF1 both 3.1667 1.1526 5.4911 0.8422
CASTPWKF1 both 6.25 0.7645 7.7919 4.7081
NODCASTF1 both 3.95 1.0564 6.0804 1.8196
NODNZOF1 both 1.6667 1.1526 3.9911 0.0
PWKAF1 both 4.75 1.2626 7.2963 2.2037
WSBB6F1 both 4.3333 1.1526 6.6578 2.0089
WSBNZOF1 both 4.6667 1.0309 6.7457 2.5876




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA