Phenotype measure:   JaxCC1   defecation_LD


  STRAIN COMPARISON PLOT
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JaxCC1 - fecal boli count, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means4.9743   n 5.5521   n
Median of the strain means5.25   n 5.7143   n
SD of the strain means± 2.0223 ± 1.447
Coefficient of variation (CV)0.4066 0.2606
Min–max range of strain means1.0   –   8.8   n 2.875   –   7.75   n
Mean sample size per strain6.2   mice 7.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 12.735 12.735 2.0554 0.1533
strain 15 423.4816 28.2321 4.5566 < 0.0001
sex:strain 15 84.125 5.6083 0.9052 0.5593
Residuals 190 1177.2079 6.1958


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 6.0 1.4142   8 0.5 0.2357 4.0, 8.0 0.51
CC002/UncJ m 5.7143 2.8702   7 1.0848 0.5023 2.0, 10.0 0.11
CC003/UncJ f 6.0 1.7321   5 0.7746 0.2887 3.0, 7.0 0.51
CC003/UncJ m 7.75 3.0957   4 1.5478 0.3994 5.0, 12.0 1.52
CC004/TauUncJ f 3.3333 1.5275   3 0.88192 0.4583 2.0, 5.0 -0.81
CC004/TauUncJ m 6.875 2.6424   8 0.93422 0.3843 2.0, 11.0 0.91
CC006/TauUncJ f 1.0 0.0   1   0.0 0.0 1.0, 1.0 -1.97
CC006/TauUncJ m 4.4 2.3022   5 1.0296 0.5232 2.0, 8.0 -0.8
CC009/UncJ f 2.875 1.5526   8 0.54894 0.5401 1.0, 6.0 -1.04
CC009/UncJ m 2.875 1.8077   8 0.63913 0.6288 1.0, 6.0 -1.85
CC010/GeniUncJ f 8.8 1.6432   5 0.73485 0.1867 7.0, 11.0 1.89
CC013/GeniUncJ f 4.2857 2.6277   7 0.99317 0.6131 1.0, 8.0 -0.34
CC013/GeniUncJ m 6.5 2.5166   4 1.2583 0.3872 3.0, 9.0 0.66
CC017/UncJ f 7.3333 2.8752   6 1.1738 0.3921 3.0, 11.0 1.17
CC017/UncJ m 6.2 1.7889   5 0.8 0.2885 5.0, 9.0 0.45
CC018/UncJ f 5.75 2.0529   8 0.7258 0.357 3.0, 10.0 0.38
CC018/UncJ m 7.25 2.1213   8 0.75 0.2926 5.0, 11.0 1.17
CC019/TauUncJ f 2.5714 1.5119   7 0.57143 0.5879 1.0, 5.0 -1.19
CC019/TauUncJ m 4.5 1.6036   8 0.56695 0.3563 3.0, 7.0 -0.73
CC024/GeniUncJ f 5.1667 2.6394   6 1.0775 0.5109 2.0, 9.0 0.1
CC024/GeniUncJ m 5.5 2.7255   8 0.96362 0.4956 1.0, 9.0 -0.04
CC025/GeniUncJ f 5.3333 1.5055   6 0.61464 0.2823 4.0, 7.0 0.18
CC025/GeniUncJ m 6.6 3.4059   10 1.077 0.516 1.0, 12.0 0.72
CC026/GeniUncJ f 2.5714 1.2724   7 0.48093 0.4948 1.0, 5.0 -1.19
CC026/GeniUncJ m 3.8571 2.6095   7 0.9863 0.6765 1.0, 9.0 -1.17
CC032/GeniUncJ f 5.875 2.997   8 1.0596 0.5101 3.0, 10.0 0.45
CC032/GeniUncJ m 4.75 3.0589   8 1.0815 0.644 1.0, 9.0 -0.55
CC040/TauUncJ f 6.1429 3.7161   7 1.4046 0.6049 1.0, 11.0 0.58
CC040/TauUncJ m 5.8571 1.7728   7 0.67006 0.3027 4.0, 9.0 0.21
CC041/TauUncJ f 7.875 2.7999   8 0.9899 0.3555 3.0, 12.0 1.43
CC041/TauUncJ m 7.25 4.097   8 1.4485 0.5651 4.0, 14.0 1.17
CC051/TauUncJ f 4.125 2.2321   8 0.78916 0.5411 1.0, 8.0 -0.42
CC051/TauUncJ m 3.2222 1.3017   9 0.4339 0.404 2.0, 5.0 -1.61
CC068/TauUncJ f 4.5 1.9149   4 0.95743 0.4255 2.0, 6.0 -0.23
CC068/TauUncJ m 5.2857 3.0938   7 1.1693 0.5853 1.0, 9.0 -0.18


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 6.0 0.88 7.7359 4.2641
CC002/UncJ m 5.7143 0.9408 7.5701 3.8585
CC003/UncJ f 6.0 1.1132 8.1958 3.8042
CC003/UncJ m 7.75 1.2446 10.205 5.295
CC004/TauUncJ f 3.3333 1.4371 6.1681 0.4986
CC004/TauUncJ m 6.875 0.88 8.6109 5.1391
CC009/UncJ f 2.875 0.88 4.6109 1.1391
CC009/UncJ m 2.875 0.88 4.6109 1.1391
CC013/GeniUncJ f 4.2857 0.9408 6.1415 2.4299
CC013/GeniUncJ m 6.5 1.2446 8.955 4.045
CC017/UncJ f 7.3333 1.0162 9.3378 5.3289
CC017/UncJ m 6.2 1.1132 8.3958 4.0042
CC018/UncJ f 5.75 0.88 7.4859 4.0141
CC018/UncJ m 7.25 0.88 8.9859 5.5141
CC019/TauUncJ f 2.5714 0.9408 4.4272 0.7157
CC019/TauUncJ m 4.5 0.88 6.2359 2.7641
CC024/GeniUncJ f 5.1667 1.0162 7.1711 3.1622
CC024/GeniUncJ m 5.5 0.88 7.2359 3.7641
CC025/GeniUncJ f 5.3333 1.0162 7.3378 3.3289
CC025/GeniUncJ m 6.6 0.7871 8.1526 5.0474
CC026/GeniUncJ f 2.5714 0.9408 4.4272 0.7157
CC026/GeniUncJ m 3.8571 0.9408 5.7129 2.0014
CC032/GeniUncJ f 5.875 0.88 7.6109 4.1391
CC032/GeniUncJ m 4.75 0.88 6.4859 3.0141
CC040/TauUncJ f 6.1429 0.9408 7.9986 4.2871
CC040/TauUncJ m 5.8571 0.9408 7.7129 4.0014
CC041/TauUncJ f 7.875 0.88 9.6109 6.1391
CC041/TauUncJ m 7.25 0.88 8.9859 5.5141
CC051/TauUncJ f 4.125 0.88 5.8609 2.3891
CC051/TauUncJ m 3.2222 0.8297 4.8589 1.5856
CC068/TauUncJ f 4.5 1.2446 6.955 2.045
CC068/TauUncJ m 5.2857 0.9408 7.1415 3.4299


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 5.8571 0.6441 7.1277 4.5866
CC003/UncJ both 6.875 0.8349 8.5218 5.2282
CC004/TauUncJ both 5.1042 0.8426 6.7662 3.4422
CC009/UncJ both 2.875 0.6223 4.1025 1.6475
CC013/GeniUncJ both 5.3929 0.7801 6.9316 3.8541
CC017/UncJ both 6.7667 0.7536 8.2532 5.2801
CC018/UncJ both 6.5 0.6223 7.7275 5.2725
CC019/TauUncJ both 3.5357 0.6441 4.8063 2.2652
CC024/GeniUncJ both 5.3333 0.6721 6.6592 4.0075
CC025/GeniUncJ both 5.9667 0.6427 7.2344 4.6989
CC026/GeniUncJ both 3.2143 0.6653 4.5265 1.9021
CC032/GeniUncJ both 5.3125 0.6223 6.54 4.085
CC040/TauUncJ both 6.0 0.6653 7.3122 4.6878
CC041/TauUncJ both 7.5625 0.6223 8.79 6.335
CC051/TauUncJ both 3.6736 0.6048 4.8665 2.4807
CC068/TauUncJ both 4.8929 0.7801 6.4316 3.3541




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA