Phenotype measure:   Wahlsten1   defecation_EPM


  STRAIN COMPARISON PLOT
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Wahlsten1 - number fecal boli, 5 min trial



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested21 strains21 strains
Mean of the strain means2.11   n 2.52   n
Median of the strain means2.20   n 2.58   n
SD of the strain means± 1.24 ± 1.65
Coefficient of variation (CV)0.588 0.653
Min–max range of strain means0   –   4.62   n 0   –   6.00   n
Mean sample size per strain8.9   mice 8.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 22.6033 22.6033 6.1807 0.0134
strain 20 642.7025 32.1351 8.787 < 0.0001
sex:strain 20 98.7904 4.9395 1.3507 0.145
Residuals 329 1203.1868 3.6571


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 3.14 2.27   7 0.857 0.722 0.83
129S1/SvImJ m 2.9 1.79   10 0.567 0.618 0.23
A/J f 3.75 2.31   8 0.818 0.617 1.32
A/J m 3.75 2.12   8 0.75 0.566 1.0, 8.0 0.75
AKR/J f 2.12 1.81   8 0.639 0.851 0.01
AKR/J m 4.25 2.6   8 0.921 0.613 1.05
BALB/cByJ f 3.3 1.7   10 0.539 0.516 1.0, 6.0 0.96
BALB/cByJ m 6.0 3.93   8 1.39 0.655 2.0, 12.0 2.11
BTBR T+ Itpr3tf/J f 2.42 1.08   12 0.313 0.448 0.25
BTBR T+ Itpr3tf/J m 2.6 1.95   5 0.872 0.75 0.05
C3H/HeJ f 1.38 1.19   8 0.42 0.864 -0.59
C3H/HeJ m 1.25 2.05   8 0.726 1.64 -0.77
C57BL/6J f 0.125 0.354   8 0.125 2.83 -1.6
C57BL/6J m 0.0 0.0   10 0.0 0.0 -1.53
C57L/J f 2.2 2.62   10 0.827 1.19 0.07
C57L/J m 1.0 1.26   6 0.516 1.26 -0.92
C58/J f 2.5 1.77   8 0.627 0.709 0.31
C58/J m 4.4 2.88   10 0.909 0.653 1.0, 8.0 1.14
CAST/EiJ f 1.75 1.83   8 0.648 1.05 -0.29
CAST/EiJ m 1.44 2.13   9 0.709 1.47 -0.66
DBA/2J f 2.5 2.14   8 0.756 0.855 1.0, 7.0 0.31
DBA/2J m 2.0 1.77   8 0.627 0.886 -0.32
FVB/NJ f 0.0 0.0   10 0.0 0.0 -1.7
FVB/NJ m 1.45 1.86   11 0.562 1.28 -0.65
MOLF/EiJ f 2.75 1.67   8 0.59 0.607 0.52
MOLF/EiJ m 4.86 2.91   7 1.1 0.599 1.42
NOD/ShiLtJ f 0.0833 0.289   12 0.0833 3.46 -1.63
NOD/ShiLtJ m 0.333 0.888   12 0.256 2.66 -1.33
NZB/BlNJ f 2.0 1.26   6 0.516 0.632 1.0, 4.0 -0.09
NZB/BlNJ m 2.58 1.56   12 0.452 0.606 1.0, 5.0 0.04
PERA/EiJ f 1.9 1.52   10 0.482 0.802 -0.17
PERA/EiJ m 1.91 1.76   11 0.53 0.921 -0.37
PL/J f 3.0 1.04   12 0.302 0.348 1.0, 5.0 0.72
PL/J m 3.12 1.46   8 0.515 0.466 1.0, 6.0 0.36
SJL/J f 4.62 2.56   8 0.905 0.554 1.0, 7.0 2.02
SJL/J m 3.4 2.88   10 0.909 0.846 0.53
SM/J f 0.5 1.09   14 0.292 2.18 -1.3
SM/J m 1.0 1.6   8 0.567 1.6 -0.92
SPRET/EiJ f 1.17 2.4   6 0.98 2.06 -0.76
SPRET/EiJ m 0.5 0.707   2   0.5 1.41 -1.23
SWR/J f 3.11 2.03   9 0.676 0.652 0.81
SWR/J m 4.2 2.94   10 0.929 0.699 1.02


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 3.1429 0.7228 4.5648 1.721
129S1/SvImJ m 2.9 0.6047 4.0896 1.7104
A/J f 3.75 0.6761 5.0801 2.4199
A/J m 3.75 0.6761 5.0801 2.4199
AKR/J f 2.125 0.6761 3.4551 0.7949
AKR/J m 4.25 0.6761 5.5801 2.9199
BALB/cByJ f 3.3 0.6047 4.4896 2.1104
BALB/cByJ m 6.0 0.6761 7.3301 4.6699
BTBR T+ Itpr3tf/J f 2.4167 0.552 3.5027 1.3307
BTBR T+ Itpr3tf/J m 2.6 0.8552 4.2824 0.9176
C3H/HeJ f 1.375 0.6761 2.7051 0.0449
C3H/HeJ m 1.25 0.6761 2.5801 -0.0801
C57BL/6J f 0.125 0.6761 1.4551 -1.2051
C57BL/6J m 0.0 0.6047 1.1896 -1.1896
C57L/J f 2.2 0.6047 3.3896 1.0104
C57L/J m 1.0 0.7807 2.5358 -0.5358
C58/J f 2.5 0.6761 3.8301 1.1699
C58/J m 4.4 0.6047 5.5896 3.2104
CAST/EiJ f 1.75 0.6761 3.0801 0.4199
CAST/EiJ m 1.4444 0.6375 2.6984 0.1904
DBA/2J f 2.5 0.6761 3.8301 1.1699
DBA/2J m 2.0 0.6761 3.3301 0.6699
FVB/NJ f 0.0 0.6047 1.1896 -1.1896
FVB/NJ m 1.4545 0.5766 2.5888 0.3203
MOLF/EiJ f 2.75 0.6761 4.0801 1.4199
MOLF/EiJ m 4.8571 0.7228 6.279 3.4352
NOD/ShiLtJ f 0.0833 0.552 1.1693 -1.0027
NOD/ShiLtJ m 0.3333 0.552 1.4193 -0.7527
NZB/BlNJ f 2.0 0.7807 3.5358 0.4642
NZB/BlNJ m 2.5833 0.552 3.6693 1.4973
PERA/EiJ f 1.9 0.6047 3.0896 0.7104
PERA/EiJ m 1.9091 0.5766 3.0434 0.7748
PL/J f 3.0 0.552 4.086 1.914
PL/J m 3.125 0.6761 4.4551 1.7949
SJL/J f 4.625 0.6761 5.9551 3.2949
SJL/J m 3.4 0.6047 4.5896 2.2104
SM/J f 0.5 0.5111 1.5054 -0.5054
SM/J m 1.0 0.6761 2.3301 -0.3301
SPRET/EiJ f 1.1667 0.7807 2.7025 -0.3692
SPRET/EiJ m 0.5 1.3522 3.1601 -2.1601
SWR/J f 3.1111 0.6375 4.3651 1.8571
SWR/J m 4.2 0.6047 5.3896 3.0104


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 3.0214 0.4712 3.9484 2.0945
A/J both 3.75 0.4781 4.6905 2.8095
AKR/J both 3.1875 0.4781 4.128 2.247
BALB/cByJ both 4.65 0.4536 5.5422 3.7578
BTBR T+ Itpr3tf/J both 2.5083 0.509 3.5096 1.5071
C3H/HeJ both 1.3125 0.4781 2.253 0.372
C57BL/6J both 0.0625 0.4536 0.9547 -0.8297
C57L/J both 1.6 0.4938 2.5713 0.6287
C58/J both 3.45 0.4536 4.3422 2.5578
CAST/EiJ both 1.5972 0.4646 2.5112 0.6832
DBA/2J both 2.25 0.4781 3.1905 1.3095
FVB/NJ both 0.7273 0.4178 1.5491 -0.0946
MOLF/EiJ both 3.8036 0.4949 4.7771 2.8301
NOD/ShiLtJ both 0.2083 0.3904 0.9762 -0.5596
NZB/BlNJ both 2.2917 0.4781 3.2322 1.3512
PERA/EiJ both 1.9045 0.4178 2.7264 1.0827
PL/J both 3.0625 0.4364 3.9211 2.2039
SJL/J both 4.0125 0.4536 4.9047 3.1203
SM/J both 0.75 0.4238 1.5837 -0.0837
SPRET/EiJ both 0.8333 0.7807 2.3692 -0.7025
SWR/J both 3.6556 0.4393 4.5198 2.7913




  GWAS USING LINEAR MIXED MODELS