Project measure / variable:   JaxCC1   defecation_OF

ID, description, units MPD:89025   defecation_OF   number of fecal boli, 20 min test   [n]  
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 7-9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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JaxCC1 - number of fecal boli, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means6.7713   n 7.3696   n
Median of the strain means6.6875   n 6.875   n
SD of the strain means± 2.1012 ± 2.6914
Coefficient of variation (CV)0.3103 0.3652
Min–max range of strain means3.2   –   11.0   n 4.1   –   13.75   n
Mean sample size per strain6.8   mice 7.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 9.0567 9.0567 1.8215 0.1786
strain 16 965.7807 60.3613 12.14 < 0.0001
sex:strain 16 245.3288 15.3331 3.0838 0.0001
Residuals 210 1044.1452 4.9721


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 6.5 2.0702   8 0.73193 0.3185 4.0, 10.0 -0.13
CC002/UncJ m 8.5714 3.2071   7 1.2122 0.3742 4.0, 14.0 0.45
CC003/UncJ f 10.2 3.4205   5 1.5297 0.3353 7.0, 15.0 1.63
CC003/UncJ m 13.75 2.63   4 1.315 0.1913 11.0, 16.0 2.37
CC004/TauUncJ f 5.625 3.42   8 1.2092 0.608 2.0, 10.0 -0.55
CC004/TauUncJ m 7.75 1.7525   8 0.61962 0.2261 5.0, 11.0 0.14
CC006/TauUncJ f 5.75 0.95743   4 0.47871 0.1665 5.0, 7.0 -0.49
CC006/TauUncJ m 4.4286 1.9024   7 0.71903 0.4296 1.0, 7.0 -1.09
CC009/UncJ f 4.875 0.83452   8 0.29505 0.1712 4.0, 6.0 -0.9
CC009/UncJ m 4.75 1.9086   8 0.6748 0.4018 2.0, 8.0 -0.97
CC010/GeniUncJ f 8.4 3.3615   5 1.5033 0.4002 6.0, 14.0 0.78
CC013/GeniUncJ f 4.0 2.0817   7 0.7868 0.5204 2.0, 8.0 -1.32
CC013/GeniUncJ m 9.3333 1.5275   3 0.88192 0.1637 8.0, 11.0 0.73
CC017/UncJ f 8.3333 1.633   6 0.66667 0.196 6.0, 10.0 0.74
CC017/UncJ m 8.4 1.5166   5 0.67823 0.1805 6.0, 10.0 0.38
CC018/UncJ f 8.25 1.669   8 0.5901 0.2023 7.0, 12.0 0.7
CC018/UncJ m 6.875 1.2464   8 0.44068 0.1813 5.0, 8.0 -0.18
CC019/TauUncJ f 4.6667 1.9664   6 0.80277 0.4214 3.0, 8.0 -1.0
CC019/TauUncJ m 4.875 1.7269   8 0.61055 0.3542 2.0, 8.0 -0.93
CC024/GeniUncJ f 11.0 2.0817   7 0.7868 0.1892 9.0, 15.0 2.01
CC024/GeniUncJ m 11.0 2.7775   8 0.98198 0.2525 7.0, 16.0 1.35
CC025/GeniUncJ f 7.8333 2.137   6 0.87242 0.2728 5.0, 11.0 0.51
CC025/GeniUncJ m 9.7 1.767   10 0.55877 0.1822 7.0, 13.0 0.87
CC026/GeniUncJ f 5.25 1.3887   8 0.49099 0.2645 3.0, 7.0 -0.72
CC026/GeniUncJ m 6.875 1.126   8 0.3981 0.1638 6.0, 9.0 -0.18
CC032/GeniUncJ f 5.5 3.1623   8 1.118 0.575 2.0, 11.0 -0.61
CC032/GeniUncJ m 6.125 2.5319   8 0.89518 0.4134 3.0, 11.0 -0.46
CC040/TauUncJ f 7.75 3.151   8 1.114 0.4066 2.0, 11.0 0.47
CC040/TauUncJ m 4.375 1.8468   8 0.65295 0.4221 1.0, 7.0 -1.11
CC041/TauUncJ f 7.875 2.6959   8 0.95314 0.3423 5.0, 12.0 0.53
CC041/TauUncJ m 9.0 3.2071   8 1.1339 0.3563 5.0, 14.0 0.61
CC051/TauUncJ f 6.875 2.5319   8 0.89518 0.3683 4.0, 10.0 0.05
CC051/TauUncJ m 4.1 1.5239   10 0.48189 0.3717 1.0, 7.0 -1.21
CC068/TauUncJ f 3.2 1.0954   5 0.4899 0.3423 2.0, 5.0 -1.7
CC068/TauUncJ m 5.375 2.6152   8 0.92461 0.4865 1.0, 9.0 -0.74


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 6.5 0.7884 8.0541 4.9459
CC002/UncJ m 8.5714 0.8428 10.2329 6.91
CC003/UncJ f 10.2 0.9972 12.1658 8.2342
CC003/UncJ m 13.75 1.1149 15.9479 11.5521
CC004/TauUncJ f 5.625 0.7884 7.1791 4.0709
CC004/TauUncJ m 7.75 0.7884 9.3041 6.1959
CC006/TauUncJ f 5.75 1.1149 7.9479 3.5521
CC006/TauUncJ m 4.4286 0.8428 6.09 2.7671
CC009/UncJ f 4.875 0.7884 6.4291 3.3209
CC009/UncJ m 4.75 0.7884 6.3041 3.1959
CC013/GeniUncJ f 4.0 0.8428 5.6614 2.3386
CC013/GeniUncJ m 9.3333 1.2874 11.8712 6.7955
CC017/UncJ f 8.3333 0.9103 10.1279 6.5388
CC017/UncJ m 8.4 0.9972 10.3658 6.4342
CC018/UncJ f 8.25 0.7884 9.8041 6.6959
CC018/UncJ m 6.875 0.7884 8.4291 5.3209
CC019/TauUncJ f 4.6667 0.9103 6.4612 2.8721
CC019/TauUncJ m 4.875 0.7884 6.4291 3.3209
CC024/GeniUncJ f 11.0 0.8428 12.6614 9.3386
CC024/GeniUncJ m 11.0 0.7884 12.5541 9.4459
CC025/GeniUncJ f 7.8333 0.9103 9.6279 6.0388
CC025/GeniUncJ m 9.7 0.7051 11.09 8.31
CC026/GeniUncJ f 5.25 0.7884 6.8041 3.6959
CC026/GeniUncJ m 6.875 0.7884 8.4291 5.3209
CC032/GeniUncJ f 5.5 0.7884 7.0541 3.9459
CC032/GeniUncJ m 6.125 0.7884 7.6791 4.5709
CC040/TauUncJ f 7.75 0.7884 9.3041 6.1959
CC040/TauUncJ m 4.375 0.7884 5.9291 2.8209
CC041/TauUncJ f 7.875 0.7884 9.4291 6.3209
CC041/TauUncJ m 9.0 0.7884 10.5541 7.4459
CC051/TauUncJ f 6.875 0.7884 8.4291 5.3209
CC051/TauUncJ m 4.1 0.7051 5.49 2.71
CC068/TauUncJ f 3.2 0.9972 5.1658 1.2342
CC068/TauUncJ m 5.375 0.7884 6.9291 3.8209


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 7.5357 0.577 8.6732 6.3982
CC003/UncJ both 11.975 0.7479 13.4494 10.5006
CC004/TauUncJ both 6.6875 0.5575 7.7864 5.5886
CC006/TauUncJ both 5.0893 0.6988 6.4669 3.7117
CC009/UncJ both 4.8125 0.5575 5.9114 3.7136
CC013/GeniUncJ both 6.6667 0.7694 8.1833 5.15
CC017/UncJ both 8.3667 0.6751 9.6975 7.0358
CC018/UncJ both 7.5625 0.5575 8.6614 6.4636
CC019/TauUncJ both 4.7708 0.6021 5.9578 3.5839
CC024/GeniUncJ both 11.0 0.577 12.1375 9.8625
CC025/GeniUncJ both 8.7667 0.5757 9.9016 7.6317
CC026/GeniUncJ both 6.0625 0.5575 7.1614 4.9636
CC032/GeniUncJ both 5.8125 0.5575 6.9114 4.7136
CC040/TauUncJ both 6.0625 0.5575 7.1614 4.9636
CC041/TauUncJ both 8.4375 0.5575 9.5364 7.3386
CC051/TauUncJ both 5.4875 0.5288 6.53 4.445
CC068/TauUncJ both 4.2875 0.6356 5.5405 3.0345




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA