Phenotype measure:   Lake3   defecation

ID, description, units MPD:19003   defecation   number of fecal boli in 5 min test   [n]
Data set, strains Lake3   B6.A consomic w/par   23 strains     sex: both     age: 8-9wks
Procedure hole board test
Ontology mappings


  STRAIN COMPARISON PLOT
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Lake3 - number of fecal boli in 5 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested23 strains23 strains
Mean of the strain means1.26   n 1.55   n
Median of the strain means1.00   n 1.50   n
SD of the strain means± 0.732 ± 0.981
Coefficient of variation (CV)0.581 0.632
Min–max range of strain means0.125   –   3.12   n 0.250   –   4.12   n
Mean sample size per strain8.4   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 6.0836 6.0836 3.7815 0.0527
strain 22 240.8757 10.9489 6.8058 < 0.0001
sex:strain 22 54.23 2.465 1.5322 0.0609
Residuals 336 540.5411 1.6088


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 3.12 1.41   16 0.352 0.451 0.0, 6.0 2.54
A/J m 4.12 1.55   8 0.549 0.376 1.0, 6.0 2.62
B6.A-Chr1 f 1.0 0.756   8 0.267 0.756 0.0, 2.0 -0.36
B6.A-Chr1 m 1.88 1.25   8 0.441 0.665 0.0, 4.0 0.33
B6.A-Chr10 f 1.5 1.07   8 0.378 0.713 0.0, 3.0 0.33
B6.A-Chr10 m 2.12 0.835   8 0.295 0.393 1.0, 3.0 0.58
B6.A-Chr11 f 1.0 1.31   8 0.463 1.31 0.0, 3.0 -0.36
B6.A-Chr11 m 2.0 1.25   10 0.394 0.624 0.0, 4.0 0.46
B6.A-Chr12 f 2.12 1.55   8 0.549 0.731 0.0, 4.0 1.17
B6.A-Chr12 m 2.5 2.45   8 0.866 0.98 0.0, 7.0 0.97
B6.A-Chr13 f 1.2 1.64   5 0.735 1.37 0.0, 4.0 -0.08
B6.A-Chr13 m 0.714 0.756   7 0.286 1.06 0.0, 2.0 -0.85
B6.A-Chr14 f 1.75 1.16   8 0.412 0.666 0.0, 3.0 0.67
B6.A-Chr14 m 0.75 0.886   8 0.313 1.18 0.0, 2.0 -0.82
B6.A-Chr15 f 1.0 1.41   8 0.5 1.41 0.0, 3.0 -0.36
B6.A-Chr15 m 0.75 1.04   8 0.366 1.38 0.0, 3.0 -0.82
B6.A-Chr16 f 0.125 0.354   8 0.125 2.83 0.0, 1.0 -1.55
B6.A-Chr16 m 1.0 1.41   8 0.5 1.41 0.0, 4.0 -0.56
B6.A-Chr17 f 0.25 0.707   8 0.25 2.83 0.0, 2.0 -1.38
B6.A-Chr17 m 1.25 0.707   8 0.25 0.566 0.0, 2.0 -0.31
B6.A-Chr18 f 0.75 1.04   8 0.366 1.38 0.0, 3.0 -0.7
B6.A-Chr18 m 0.5 0.535   8 0.189 1.07 0.0, 1.0 -1.07
B6.A-Chr19 f 1.25 0.886   8 0.313 0.709 0.0, 3.0 -0.02
B6.A-Chr19 m 2.0 1.2   8 0.423 0.598 0.0, 4.0 0.46
B6.A-Chr2 f 1.62 1.3   8 0.46 0.802 0.0, 3.0 0.49
B6.A-Chr2 m 2.62 1.85   8 0.653 0.704 0.0, 5.0 1.09
B6.A-Chr3 f 1.0 1.31   8 0.463 1.31 0.0, 3.0 -0.36
B6.A-Chr3 m 2.12 1.13   8 0.398 0.53 0.0, 4.0 0.58
B6.A-Chr4 f 2.5 1.41   8 0.5 0.566 0.0, 4.0 1.69
B6.A-Chr4 m 1.5 1.51   8 0.535 1.01 0.0, 4.0 -0.05
B6.A-Chr5 f 0.875 0.991   8 0.35 1.13 0.0, 2.0 -0.53
B6.A-Chr5 m 1.12 0.991   8 0.35 0.881 0.0, 3.0 -0.44
B6.A-Chr6 f 1.38 1.69   8 0.596 1.23 0.0, 4.0 0.16
B6.A-Chr6 m 2.62 1.77   8 0.625 0.673 0.0, 5.0 1.09
B6.A-Chr7 f 0.5 0.756   8 0.267 1.51 0.0, 2.0 -1.04
B6.A-Chr7 m 0.875 0.835   8 0.295 0.954 0.0, 2.0 -0.69
B6.A-Chr8 f 2.38 2.13   8 0.754 0.898 0.0, 5.0 1.53
B6.A-Chr8 m 2.38 1.6   8 0.565 0.673 0.0, 5.0 0.84
B6.A-Chr9 f 0.875 1.13   8 0.398 1.29 0.0, 3.0 -0.53
B6.A-Chr9 m 2.12 2.47   8 0.875 1.16 0.0, 7.0 0.58
B6.A-ChrX f 0.875 0.354   8 0.125 0.404 0.0, 1.0 -0.53
B6.A-ChrX m 0.25 0.707   8 0.25 2.83 0.0, 2.0 -1.33
B6.A-ChrY f 1.38 1.06   8 0.375 0.771 0.0, 3.0 0.16
B6.A-ChrY m 0.25 0.463   8 0.164 1.85 0.0, 1.0 -1.33
C57BL/6J f 0.562 0.964   16 0.241 1.71 0.0, 3.0 -0.96
C57BL/6J m 0.25 0.707   8 0.25 2.83 0.0, 2.0 -1.33


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 3.125 0.3171 3.7487 2.5013
A/J m 4.125 0.4484 5.0071 3.2429
B6.A-Chr1 f 1.0 0.4484 1.8821 0.1179
B6.A-Chr1 m 1.875 0.4484 2.7571 0.9929
B6.A-Chr10 f 1.5 0.4484 2.3821 0.6179
B6.A-Chr10 m 2.125 0.4484 3.0071 1.2429
B6.A-Chr11 f 1.0 0.4484 1.8821 0.1179
B6.A-Chr11 m 2.0 0.4011 2.789 1.211
B6.A-Chr12 f 2.125 0.4484 3.0071 1.2429
B6.A-Chr12 m 2.5 0.4484 3.3821 1.6179
B6.A-Chr13 f 1.2 0.5672 2.3158 0.0842
B6.A-Chr13 m 0.7143 0.4794 1.6573 0.0
B6.A-Chr14 f 1.75 0.4484 2.6321 0.8679
B6.A-Chr14 m 0.75 0.4484 1.6321 0.0
B6.A-Chr15 f 1.0 0.4484 1.8821 0.1179
B6.A-Chr15 m 0.75 0.4484 1.6321 0.0
B6.A-Chr16 f 0.125 0.4484 1.0071 0.0
B6.A-Chr16 m 1.0 0.4484 1.8821 0.1179
B6.A-Chr17 f 0.25 0.4484 1.1321 0.0
B6.A-Chr17 m 1.25 0.4484 2.1321 0.3679
B6.A-Chr18 f 0.75 0.4484 1.6321 0.0
B6.A-Chr18 m 0.5 0.4484 1.3821 0.0
B6.A-Chr19 f 1.25 0.4484 2.1321 0.3679
B6.A-Chr19 m 2.0 0.4484 2.8821 1.1179
B6.A-Chr2 f 1.625 0.4484 2.5071 0.7429
B6.A-Chr2 m 2.625 0.4484 3.5071 1.7429
B6.A-Chr3 f 1.0 0.4484 1.8821 0.1179
B6.A-Chr3 m 2.125 0.4484 3.0071 1.2429
B6.A-Chr4 f 2.5 0.4484 3.3821 1.6179
B6.A-Chr4 m 1.5 0.4484 2.3821 0.6179
B6.A-Chr5 f 0.875 0.4484 1.7571 0.0
B6.A-Chr5 m 1.125 0.4484 2.0071 0.2429
B6.A-Chr6 f 1.375 0.4484 2.2571 0.4929
B6.A-Chr6 m 2.625 0.4484 3.5071 1.7429
B6.A-Chr7 f 0.5 0.4484 1.3821 0.0
B6.A-Chr7 m 0.875 0.4484 1.7571 0.0
B6.A-Chr8 f 2.375 0.4484 3.2571 1.4929
B6.A-Chr8 m 2.375 0.4484 3.2571 1.4929
B6.A-Chr9 f 0.875 0.4484 1.7571 0.0
B6.A-Chr9 m 2.125 0.4484 3.0071 1.2429
B6.A-ChrX f 0.875 0.4484 1.7571 0.0
B6.A-ChrX m 0.25 0.4484 1.1321 0.0
B6.A-ChrY f 1.375 0.4484 2.2571 0.4929
B6.A-ChrY m 0.25 0.4484 1.1321 0.0
C57BL/6J f 0.5625 0.3171 1.1862 0.0
C57BL/6J m 0.25 0.4484 1.1321 0.0


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 3.625 0.2746 4.1652 3.0848
B6.A-Chr1 both 1.4375 0.3171 2.0612 0.8138
B6.A-Chr10 both 1.8125 0.3171 2.4362 1.1888
B6.A-Chr11 both 1.5 0.3008 2.0917 0.9083
B6.A-Chr12 both 2.3125 0.3171 2.9362 1.6888
B6.A-Chr13 both 0.9571 0.3713 1.6876 0.2267
B6.A-Chr14 both 1.25 0.3171 1.8737 0.6263
B6.A-Chr15 both 0.875 0.3171 1.4987 0.2513
B6.A-Chr16 both 0.5625 0.3171 1.1862 0.0
B6.A-Chr17 both 0.75 0.3171 1.3737 0.1263
B6.A-Chr18 both 0.625 0.3171 1.2487 0.0013
B6.A-Chr19 both 1.625 0.3171 2.2487 1.0013
B6.A-Chr2 both 2.125 0.3171 2.7487 1.5013
B6.A-Chr3 both 1.5625 0.3171 2.1862 0.9388
B6.A-Chr4 both 2.0 0.3171 2.6237 1.3763
B6.A-Chr5 both 1.0 0.3171 1.6237 0.3763
B6.A-Chr6 both 2.0 0.3171 2.6237 1.3763
B6.A-Chr7 both 0.6875 0.3171 1.3112 0.0638
B6.A-Chr8 both 2.375 0.3171 2.9987 1.7513
B6.A-Chr9 both 1.5 0.3171 2.1237 0.8763
B6.A-ChrX both 0.5625 0.3171 1.1862 0.0
B6.A-ChrY both 0.8125 0.3171 1.4362 0.1888
C57BL/6J both 0.4062 0.2746 0.9464 0.0