Project measure / variable:   Brown1   defecation_LD

ID, description, units MPD:9416   defecation_LD   fecal boli count   [n]  
Data set, strains Brown1   inbred   14 strains     sex: both     age: 10wks
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  STRAIN COMPARISON PLOT
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Brown1 - fecal boli count



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested14 strains14 strains
Mean of the strain means2.50   n 3.73   n
Median of the strain means2.57   n 3.45   n
SD of the strain means± 1.59 ± 2.19
Coefficient of variation (CV)0.635 0.588
Min–max range of strain means0   –   4.33   n 0.667   –   7.17   n
Mean sample size per strain12.6   mice 13.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 126.7767 126.7767 23.3338 < 0.0001
strain 13 1085.8603 83.5277 15.3736 < 0.0001
sex:strain 13 215.6456 16.5881 3.0531 0.0003
Residuals 345 1874.4465 5.4332


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 4.25 2.73   12 0.789 0.643 1.0, 10.0 1.1
129S1/SvImJ m 2.67 1.61   12 0.466 0.605 1.0, 6.0 -0.48
A/J f 4.33 3.75   12 1.08 0.865 1.15
A/J m 6.6 3.22   20 0.72 0.488 1.31
AKR/J f 4.08 1.73   12 0.499 0.424 2.0, 7.0 0.99
AKR/J m 6.42 1.74   19 0.4 0.271 2.0, 9.0 1.23
BALB/cByJ f 4.32 3.14   22 0.669 0.727 1.14
BALB/cByJ m 6.25 2.99   12 0.863 0.478 1.15
BALB/cJ f 3.71 2.97   14 0.794 0.8 0.76
BALB/cJ m 7.17 3.79   12 1.09 0.528 1.0, 13.0 1.57
C3H/HeJ f 2.29 1.45   17 0.351 0.631 -0.14
C3H/HeJ m 1.56 1.5   18 0.354 0.967 -0.99
C57BL/6J f 1.25 1.14   12 0.329 0.911 -0.79
C57BL/6J m 1.0 1.0   13 0.277 1.0 -1.25
CAST/EiJ f 0.8 0.789   10 0.249 0.986 -1.07
CAST/EiJ m 0.667 1.07   12 0.31 1.61 -1.4
DBA/2J f 3.57 2.5   14 0.669 0.701 1.0, 9.0 0.67
DBA/2J m 3.31 2.87   13 0.796 0.867 -0.19
FVB/NJ f 0.0 0.0   12 0.0 0.0 -1.57
FVB/NJ m 3.58 3.0   12 0.866 0.837 -0.07
MOLF/EiJ f 1.7 1.83   10 0.578 1.08 -0.51
MOLF/EiJ m 3.64 2.2   11 0.664 0.606 -0.04
SJL/J f 2.85 2.54   13 0.706 0.894 0.22
SJL/J m 4.83 2.52   12 0.726 0.521 2.0, 11.0 0.5
SM/J f 0.0 0.0   9 0.0 0.0 -1.57
SM/J m 1.83 2.08   12 0.601 1.14 -0.87
SPRET/EiJ f 1.92 1.85   13 0.512 0.96 -0.37
SPRET/EiJ m 2.69 1.75   13 0.485 0.65 1.0, 6.0 -0.47


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 4.25 0.6729 5.5735 2.9265
129S1/SvImJ m 2.6667 0.6729 3.9901 1.3432
A/J f 4.3333 0.6729 5.6568 3.0099
A/J m 6.6 0.5212 7.6251 5.5749
AKR/J f 4.0833 0.6729 5.4068 2.7599
AKR/J m 6.4211 0.5347 7.4728 5.3693
BALB/cByJ f 4.3182 0.497 5.2956 3.3407
BALB/cByJ m 6.25 0.6729 7.5735 4.9265
BALB/cJ f 3.7143 0.623 4.9396 2.489
BALB/cJ m 7.1667 0.6729 8.4901 5.8432
C3H/HeJ f 2.2941 0.5653 3.406 1.1822
C3H/HeJ m 1.5556 0.5494 2.6362 0.475
C57BL/6J f 1.25 0.6729 2.5735 -0.0735
C57BL/6J m 1.0 0.6465 2.2715 -0.2715
CAST/EiJ f 0.8 0.7371 2.2498 -0.6498
CAST/EiJ m 0.6667 0.6729 1.9901 -0.6568
DBA/2J f 3.5714 0.623 4.7967 2.3461
DBA/2J m 3.3077 0.6465 4.5792 2.0362
FVB/NJ f 0.0 0.6729 1.3235 -1.3235
FVB/NJ m 3.5833 0.6729 4.9068 2.2599
MOLF/EiJ f 1.7 0.7371 3.1498 0.2502
MOLF/EiJ m 3.6364 0.7028 5.0187 2.2541
SJL/J f 2.8462 0.6465 4.1177 1.5746
SJL/J m 4.8333 0.6729 6.1568 3.5099
SM/J f 0.0 0.777 1.5282 -1.5282
SM/J m 1.8333 0.6729 3.1568 0.5099
SPRET/EiJ f 1.9231 0.6465 3.1946 0.6515
SPRET/EiJ m 2.6923 0.6465 3.9638 1.4208


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 3.4583 0.4758 4.3942 2.5225
A/J both 5.4667 0.4256 6.3037 4.6296
AKR/J both 5.2522 0.4297 6.0974 4.4069
BALB/cByJ both 5.2841 0.4182 6.1067 4.4615
BALB/cJ both 5.4405 0.4585 6.3423 4.5387
C3H/HeJ both 1.9248 0.3942 2.7001 1.1496
C57BL/6J both 1.125 0.4666 2.0427 0.2073
CAST/EiJ both 0.7333 0.499 1.7148 -0.2482
DBA/2J both 3.4396 0.4489 4.3225 2.5566
FVB/NJ both 1.7917 0.4758 2.7275 0.8558
MOLF/EiJ both 2.6682 0.5092 3.6698 1.6666
SJL/J both 3.8397 0.4666 4.7574 2.9221
SM/J both 0.9167 0.5139 1.9275 -0.0941
SPRET/EiJ both 2.3077 0.4571 3.2068 1.4086




  GWAS USING LINEAR MIXED MODELS