Phenotype measure:   Lake2   defecation_jar

ID, description, units MPD:21704   defecation_jar   number of fecal boli in view-jar   [n]
Data set, strains Lake2   B6.A consomic w/par   23 strains     sex: both     age: 8wks
Procedure observation (SHIRPA)
Ontology mappings

  STRAIN COMPARISON PLOT
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Lake2 - number of fecal boli in view-jar



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested23 strains23 strains
Mean of the strain means0.215   n 0.0986   n
Median of the strain means0.125   n 0.125   n
SD of the strain means± 0.359 ± 0.113
Coefficient of variation (CV)1.67 1.15
Min–max range of strain means0   –   1.62   n 0   –   0.375   n
Mean sample size per strain8.4   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 3.7071 3.7071 13.6641 0.0003
strain 22 27.4858 1.2494 4.605 < 0.0001
sex:strain 22 14.5296 0.6604 2.4343 0.0004
Residuals 336 91.1571 0.2713


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 1.62 1.59   16 0.397 0.976 3.91
A/J m 0.125 0.354   8 0.125 2.83 0.23
B6.A-Chr1 f 0.375 0.744   8 0.263 1.98 0.45
B6.A-Chr1 m 0.25 0.463   8 0.164 1.85 1.34
B6.A-Chr10 f 0.25 0.463   8 0.164 1.85 0.1
B6.A-Chr10 m 0.125 0.354   8 0.125 2.83 0.23
B6.A-Chr11 f 0.0 0.0   8 0.0 0.0 -0.6
B6.A-Chr11 m 0.0 0.0   10 0.0 0.0 -0.87
B6.A-Chr12 f 0.0 0.0   8 0.0 0.0 -0.6
B6.A-Chr12 m 0.0 0.0   8 0.0 0.0 -0.87
B6.A-Chr13 f 0.2 0.447   5 0.2 2.24 -0.04
B6.A-Chr13 m 0.143 0.378   7 0.143 2.65 0.39
B6.A-Chr14 f 0.0 0.0   8 0.0 0.0 -0.6
B6.A-Chr14 m 0.25 0.463   8 0.164 1.85 1.34
B6.A-Chr15 f 0.125 0.354   8 0.125 2.83 -0.25
B6.A-Chr15 m 0.0 0.0   8 0.0 0.0 -0.87
B6.A-Chr16 f 0.0 0.0   8 0.0 0.0 -0.6
B6.A-Chr16 m 0.375 0.744   8 0.263 1.98 2.44
B6.A-Chr17 f 0.125 0.354   8 0.125 2.83 -0.25
B6.A-Chr17 m 0.0 0.0   8 0.0 0.0 -0.87
B6.A-Chr18 f 0.0 0.0   8 0.0 0.0 -0.6
B6.A-Chr18 m 0.125 0.354   8 0.125 2.83 0.23
B6.A-Chr19 f 0.0 0.0   8 0.0 0.0 -0.6
B6.A-Chr19 m 0.0 0.0   8 0.0 0.0 -0.87
B6.A-Chr2 f 0.25 0.707   8 0.25 2.83 0.1
B6.A-Chr2 m 0.0 0.0   8 0.0 0.0 -0.87
B6.A-Chr3 f 0.375 0.744   8 0.263 1.98 0.45
B6.A-Chr3 m 0.125 0.354   8 0.125 2.83 0.23
B6.A-Chr4 f 0.375 0.744   8 0.263 1.98 0.45
B6.A-Chr4 m 0.25 0.463   8 0.164 1.85 1.34
B6.A-Chr5 f 0.0 0.0   8 0.0 0.0 -0.6
B6.A-Chr5 m 0.25 0.463   8 0.164 1.85 1.34
B6.A-Chr6 f 0.25 0.463   8 0.164 1.85 0.1
B6.A-Chr6 m 0.0 0.0   8 0.0 0.0 -0.87
B6.A-Chr7 f 0.125 0.354   8 0.125 2.83 -0.25
B6.A-Chr7 m 0.0 0.0   8 0.0 0.0 -0.87
B6.A-Chr8 f 0.0 0.0   8 0.0 0.0 -0.6
B6.A-Chr8 m 0.0 0.0   8 0.0 0.0 -0.87
B6.A-Chr9 f 0.125 0.354   8 0.125 2.83 -0.25
B6.A-Chr9 m 0.0 0.0   8 0.0 0.0 -0.87
B6.A-ChrX f 0.0 0.0   8 0.0 0.0 -0.6
B6.A-ChrX m 0.0 0.0   8 0.0 0.0 -0.87
B6.A-ChrY f 0.0 0.0   8 0.0 0.0 -0.6
B6.A-ChrY m 0.125 0.354   8 0.125 2.83 0.23
C57BL/6J f 0.75 1.0   16 0.25 1.33 1.49
C57BL/6J m 0.125 0.354   8 0.125 2.83 0.23


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 1.625 0.1302 1.8811 1.3689
A/J m 0.125 0.1842 0.4872 -0.2372
B6.A-Chr1 f 0.375 0.1842 0.7372 0.0128
B6.A-Chr1 m 0.25 0.1842 0.6122 -0.1122
B6.A-Chr10 f 0.25 0.1842 0.6122 -0.1122
B6.A-Chr10 m 0.125 0.1842 0.4872 -0.2372
B6.A-Chr11 f 0.0 0.1842 0.3622 -0.3622
B6.A-Chr11 m 0.0 0.1647 0.324 -0.324
B6.A-Chr12 f 0.0 0.1842 0.3622 -0.3622
B6.A-Chr12 m 0.0 0.1842 0.3622 -0.3622
B6.A-Chr13 f 0.2 0.2329 0.6582 -0.2582
B6.A-Chr13 m 0.1429 0.1969 0.5301 -0.2444
B6.A-Chr14 f 0.0 0.1842 0.3622 -0.3622
B6.A-Chr14 m 0.25 0.1842 0.6122 -0.1122
B6.A-Chr15 f 0.125 0.1842 0.4872 -0.2372
B6.A-Chr15 m 0.0 0.1842 0.3622 -0.3622
B6.A-Chr16 f 0.0 0.1842 0.3622 -0.3622
B6.A-Chr16 m 0.375 0.1842 0.7372 0.0128
B6.A-Chr17 f 0.125 0.1842 0.4872 -0.2372
B6.A-Chr17 m 0.0 0.1842 0.3622 -0.3622
B6.A-Chr18 f 0.0 0.1842 0.3622 -0.3622
B6.A-Chr18 m 0.125 0.1842 0.4872 -0.2372
B6.A-Chr19 f 0.0 0.1842 0.3622 -0.3622
B6.A-Chr19 m 0.0 0.1842 0.3622 -0.3622
B6.A-Chr2 f 0.25 0.1842 0.6122 -0.1122
B6.A-Chr2 m 0.0 0.1842 0.3622 -0.3622
B6.A-Chr3 f 0.375 0.1842 0.7372 0.0128
B6.A-Chr3 m 0.125 0.1842 0.4872 -0.2372
B6.A-Chr4 f 0.375 0.1842 0.7372 0.0128
B6.A-Chr4 m 0.25 0.1842 0.6122 -0.1122
B6.A-Chr5 f 0.0 0.1842 0.3622 -0.3622
B6.A-Chr5 m 0.25 0.1842 0.6122 -0.1122
B6.A-Chr6 f 0.25 0.1842 0.6122 -0.1122
B6.A-Chr6 m 0.0 0.1842 0.3622 -0.3622
B6.A-Chr7 f 0.125 0.1842 0.4872 -0.2372
B6.A-Chr7 m 0.0 0.1842 0.3622 -0.3622
B6.A-Chr8 f 0.0 0.1842 0.3622 -0.3622
B6.A-Chr8 m 0.0 0.1842 0.3622 -0.3622
B6.A-Chr9 f 0.125 0.1842 0.4872 -0.2372
B6.A-Chr9 m 0.0 0.1842 0.3622 -0.3622
B6.A-ChrX f 0.0 0.1842 0.3622 -0.3622
B6.A-ChrX m 0.0 0.1842 0.3622 -0.3622
B6.A-ChrY f 0.0 0.1842 0.3622 -0.3622
B6.A-ChrY m 0.125 0.1842 0.4872 -0.2372
C57BL/6J f 0.75 0.1302 1.0061 0.4939
C57BL/6J m 0.125 0.1842 0.4872 -0.2372


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 0.875 0.1128 1.0968 0.6532
B6.A-Chr1 both 0.3125 0.1302 0.5686 0.0564
B6.A-Chr10 both 0.1875 0.1302 0.4436 -0.0686
B6.A-Chr11 both 0.0 0.1235 0.243 -0.243
B6.A-Chr12 both 0.0 0.1302 0.2561 -0.2561
B6.A-Chr13 both 0.1714 0.1525 0.4714 -0.1285
B6.A-Chr14 both 0.125 0.1302 0.3811 -0.1311
B6.A-Chr15 both 0.0625 0.1302 0.3186 -0.1936
B6.A-Chr16 both 0.1875 0.1302 0.4436 -0.0686
B6.A-Chr17 both 0.0625 0.1302 0.3186 -0.1936
B6.A-Chr18 both 0.0625 0.1302 0.3186 -0.1936
B6.A-Chr19 both 0.0 0.1302 0.2561 -0.2561
B6.A-Chr2 both 0.125 0.1302 0.3811 -0.1311
B6.A-Chr3 both 0.25 0.1302 0.5061 -0.0061
B6.A-Chr4 both 0.3125 0.1302 0.5686 0.0564
B6.A-Chr5 both 0.125 0.1302 0.3811 -0.1311
B6.A-Chr6 both 0.125 0.1302 0.3811 -0.1311
B6.A-Chr7 both 0.0625 0.1302 0.3186 -0.1936
B6.A-Chr8 both 0.0 0.1302 0.2561 -0.2561
B6.A-Chr9 both 0.0625 0.1302 0.3186 -0.1936
B6.A-ChrX both 0.0 0.1302 0.2561 -0.2561
B6.A-ChrY both 0.0625 0.1302 0.3186 -0.1936
C57BL/6J both 0.4375 0.1128 0.6593 0.2157




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA