Phenotype measure:   Brown1   defecation_EPM



  STRAIN COMPARISON PLOT
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Brown1 - fecal boli count



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested14 strains13 strains
Mean of the strain means2.24   n 3.35   n
Median of the strain means2.04   n 3.25   n
SD of the strain means± 1.60 ± 2.02
Coefficient of variation (CV)0.715 0.602
Min–max range of strain means0.167   –   5.25   n 0.417   –   6.63   n
Mean sample size per strain12.2   mice 13.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 102.8596 102.8596 25.1304 < 0.0001
strain 12 948.6124 79.051 19.3136 < 0.0001
sex:strain 12 166.8039 13.9003 3.3961 0.0001
Residuals 320 1309.7703 4.093


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 3.33 1.78   12 0.512 0.533 0.0, 7.0 0.69
129S1/SvImJ m 3.25 1.36   12 0.392 0.417 1.0, 5.0 -0.05
A/J f 5.25 1.48   12 0.429 0.283 3.0, 7.0 1.89
A/J m 6.63 3.15   19 0.722 0.475 3.0, 15.0 1.63
AKR/J f 3.83 2.25   12 0.649 0.587 1.0, 8.0 1.0
AKR/J m 5.42 2.24   19 0.515 0.414 2.0, 10.0 1.03
BALB/cByJ f 2.23 1.57   22 0.335 0.706 0.0, 6.0 0.0
BALB/cByJ m 4.92 2.23   12 0.645 0.454 1.0, 8.0 0.78
BALB/cJ f 4.14 2.91   14 0.776 0.701 0.0, 9.0 1.19
BALB/cJ m 4.42 2.84   12 0.821 0.644 0.0, 9.0 0.53
C3H/HeJ f 1.18 1.29   17 0.312 1.09 0.0, 4.0 -0.66
C3H/HeJ m 0.667 1.08   18 0.256 1.63 0.0, 4.0 -1.33
C57BL/6J f 0.833 1.53   12 0.441 1.83 0.0, 5.0 -0.88
C57BL/6J m 1.62 1.76   13 0.488 1.09 0.0, 5.0 -0.86
CAST/EiJ f 1.18 1.33   11 0.4 1.12 0.0, 3.0 -0.66
CAST/EiJ m 0.417 0.996   12 0.288 2.39 0.0, 3.0 -1.45
DBA/2J f 3.85 2.48   13 0.687 0.644 1.0, 9.0 1.01
DBA/2J m 2.77 2.28   13 0.632 0.823 0.0, 7.0 -0.29
FVB/NJ f 0.167 0.389   12 0.112 2.34 0.0, 1.0 -1.29
FVB/NJ m 2.42 3.03   12 0.874 1.25 0.0, 9.0 -0.46
MOLF/EiJ f 2.0 1.89   10 0.596 0.943 0.0, 6.0 -0.15
MOLF/EiJ m 3.45 1.86   11 0.562 0.539 0.0, 7.0 0.05
SJL/J f 2.08 2.02   13 0.56 0.972 0.0, 7.0 -0.1
SJL/J m 6.0 2.22   12 0.64 0.369 3.0, 10.0 1.31
SM/J f 0.222 0.441   9 0.147 1.98 0.0, 1.0 -1.26
SM/J m 1.58 2.19   12 0.633 1.39 0.0, 6.0 -0.88
SPRET/EiJ f 1.0 0.0   1   0.0 0.0 1.0, 1.0 -0.77


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 3.3333 0.584 4.4823 2.1843
129S1/SvImJ m 3.25 0.584 4.399 2.101
A/J f 5.25 0.584 6.399 4.101
A/J m 6.6316 0.4641 7.5447 5.7184
AKR/J f 3.8333 0.584 4.9823 2.6843
AKR/J m 5.4211 0.4641 6.3342 4.5079
BALB/cByJ f 2.2273 0.4313 3.0759 1.3787
BALB/cByJ m 4.9167 0.584 6.0657 3.7677
BALB/cJ f 4.1429 0.5407 5.2066 3.0791
BALB/cJ m 4.4167 0.584 5.5657 3.2677
C3H/HeJ f 1.1765 0.4907 2.1418 0.2111
C3H/HeJ m 0.6667 0.4769 1.6048 0.0
C57BL/6J f 0.8333 0.584 1.9823 0.0
C57BL/6J m 1.6154 0.5611 2.7193 0.5114
CAST/EiJ f 1.1818 0.61 2.3819 0.0
CAST/EiJ m 0.4167 0.584 1.5657 0.0
DBA/2J f 3.8462 0.5611 4.9501 2.7422
DBA/2J m 2.7692 0.5611 3.8732 1.6653
FVB/NJ f 0.1667 0.584 1.3157 0.0
FVB/NJ m 2.4167 0.584 3.5657 1.2677
MOLF/EiJ f 2.0 0.6398 3.2587 0.7413
MOLF/EiJ m 3.4545 0.61 4.6547 2.2544
SJL/J f 2.0769 0.5611 3.1809 0.973
SJL/J m 6.0 0.584 7.149 4.851
SM/J f 0.2222 0.6744 1.549 0.0
SM/J m 1.5833 0.584 2.7323 0.4343


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 3.2917 0.413 4.1041 2.4792
A/J both 5.9408 0.373 6.6746 5.207
AKR/J both 4.6272 0.373 5.361 3.8934
BALB/cByJ both 3.572 0.363 4.2862 2.8578
BALB/cJ both 4.2798 0.3979 5.0627 3.4968
C3H/HeJ both 0.9216 0.3421 1.5946 0.2485
C57BL/6J both 1.2244 0.4049 2.0211 0.4277
CAST/EiJ both 0.7992 0.4222 1.63 0.0
DBA/2J both 3.3077 0.3968 4.0883 2.5271
FVB/NJ both 1.2917 0.413 2.1041 0.4792
MOLF/EiJ both 2.7273 0.442 3.5968 1.8577
SJL/J both 4.0385 0.4049 4.8352 3.2418
SM/J both 0.9028 0.4461 1.7804 0.0252




  GENOME-WIDE ASSOCIATION (GWAS) VIEW
Plot generated with pyLMM using 132K SNP array. Click on plot to view at larger size.