Phenotype measure:   Chesler2   fecal_boli_OFT

ID, description, units MPD:43461   fecal_boli_OFT   number of fecal boli, 10 min test   [n]
Data set, strains Chesler2   CC diallel w/par   40 strains     sex: both     age: 7-15wks
Procedure open field test
Ontology mappings

  STRAIN COMPARISON PLOT
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Chesler2 - number of fecal boli, 10 min test



  8-WAY DIALLEL CROSS VIEW
Female animals
129S ♂ A ♂ B6 ♂ CAST ♂ NOD ♂ NZO ♂ PWK ♂ WSB ♂
129S ♀ 1.00 5.50 2.50 3.00 2.00 6.00 5.00 4.50
A ♀ 6.00 7.00 7.00
B6 ♀ 1.50 2.00 2.50 3.75 3.00
CAST ♀ 3.00 3.00 4.67 5.80 6.50
NOD ♀ 5.00 4.00 2.00 4.00 1.50 4.00
NZO ♀ 4.50 4.67 3.00 5.33
PWK ♀ 4.75 3.50 5.00
WSB ♀ 3.67 6.00 4.50 5.00 7.00 1.50

Male animals
129S ♂ A ♂ B6 ♂ CAST ♂ NOD ♂ NZO ♂ PWK ♂ WSB ♂
129S ♀ 6.00 4.25 7.00 4.00 4.33 3.00 7.00
A ♀ 5.67 6.00 5.80 3.00 4.00
B6 ♀ 5.50 2.00 4.50 6.00
CAST ♀ 4.33 6.50 5.67 7.67 7.00 7.80 3.00
NOD ♀ 4.50 5.00 2.50 4.50 4.67
NZO ♀ 2.00 4.00 6.00
PWK ♀ 4.50 7.00 4.50
WSB ♀ 6.00 4.00 7.25 8.00 4.50

Cell coloring is based on strain mean Z-scores.     High-end         Mid         Low-end           Mouse over the cells to see additional info.


  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested40 strains39 strains
Mean of the strain means4.10   n 5.10   n
Median of the strain means4.25   n 4.67   n
SD of the strain means± 1.66 ± 1.60
Coefficient of variation (CV)0.405 0.313
Min–max range of strain means1.00   –   7.00   n 2.00   –   8.00   n
Mean sample size per strain2.1   mice 2.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 22.699 22.699 5.6184 0.0222
strain 10 83.8988 8.3899 2.0766 0.0475
sex:strain 10 19.7568 1.9757 0.489 0.8881
Residuals 44 177.7667 4.0402


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1.0 0.0   1   0.0 0.0 1.0, 1.0 -1.87
129SAF1 f 5.5 2.12   2   1.5 0.386 4.0, 7.0 0.84
129SAF1 m 6.0 3.0   3 1.73 0.5 3.0, 9.0 0.56
129SB6F1 f 2.5 2.12   2   1.5 0.849 1.0, 4.0 -0.96
129SB6F1 m 4.25 2.87   4 1.44 0.676 -0.53
129SCASTF1 f 3.0 1.41   2   1.0 0.471 2.0, 4.0 -0.66
129SCASTF1 m 7.0 0.0   1   0.0 0.0 7.0, 7.0 1.19
129SNODF1 f 2.0 0.0   1   0.0 0.0 2.0, 2.0 -1.26
129SNODF1 m 4.0 1.41   2   1.0 0.354 3.0, 5.0 -0.69
129SNZOF1 f 6.0 0.0   1   0.0 0.0 6.0, 6.0 1.14
129SNZOF1 m 4.33 0.577   3 0.333 0.133 4.0, 5.0 -0.48
129SPWKF1 f 5.0 0.816   4 0.408 0.163 4.0, 6.0 0.54
129SPWKF1 m 3.0 0.0   1   0.0 0.0 3.0, 3.0 -1.32
129SWSBF1 f 4.5 1.73   4 0.866 0.385 3.0, 6.0 0.24
129SWSBF1 m 7.0 0.0   2   0.0 0.0 7.0, 7.0 1.19
AB6F1 f 6.0 0.0   1   0.0 0.0 6.0, 6.0 1.14
AB6F1 m 5.67 1.53   3 0.882 0.27 4.0, 7.0 0.36
ACASTF1 m 6.0 0.0   1   0.0 0.0 6.0, 6.0 0.56
ANODF1 m 5.8 1.64   5 0.735 0.283 4.0, 8.0 0.44
ANZOF1 f 7.0 1.41   2   1.0 0.202 6.0, 8.0 1.74
APWKF1 f 7.0 0.0   1   0.0 0.0 7.0, 7.0 1.74
APWKF1 m 3.0 0.0   1   0.0 0.0 3.0, 3.0 -1.32
AWSBF1 m 4.0 0.0   1   0.0 0.0 4.0, 4.0 -0.69
B6129SF1/J f 1.5 2.12   2   1.5 1.41 -1.56
B6AF1/J f 2.0 0.0   1   0.0 0.0 2.0, 2.0 -1.26
B6AF1/J m 5.5 0.707   2   0.5 0.129 5.0, 6.0 0.25
B6CASTF1 m 2.0 0.0   2   0.0 0.0 2.0, 2.0 -1.94
B6NODF1 f 2.5 3.54   2   2.5 1.41 -0.96
B6NODF1 m 4.5 3.54   2   2.5 0.786 2.0, 7.0 -0.38
B6NZOF1 f 3.75 0.957   4 0.479 0.255 3.0, 5.0 -0.21
B6NZOF1 m 6.0 1.41   2   1.0 0.236 5.0, 7.0 0.56
B6PWKF1 f 3.0 0.0   1   0.0 0.0 3.0, 3.0 -0.66
CAST129SF1 m 4.33 1.15   3 0.667 0.266 3.0, 5.0 -0.48
CASTAF1 f 3.0 0.0   1   0.0 0.0 3.0, 3.0 -0.66
CASTAF1 m 6.5 0.707   2   0.5 0.109 6.0, 7.0 0.88
CASTB6F1 f 3.0 0.0   1   0.0 0.0 3.0, 3.0 -0.66
CASTB6F1 m 5.67 1.53   3 0.882 0.27 4.0, 7.0 0.36
CASTNODF1 m 7.67 2.52   3 1.45 0.328 5.0, 10.0 1.61
CASTNZOF1 f 4.67 2.89   3 1.67 0.619 3.0, 8.0 0.34
CASTNZOF1 m 7.0 0.0   1   0.0 0.0 7.0, 7.0 1.19
CASTPWKF1 f 5.8 1.48   5 0.663 0.256 4.0, 8.0 1.02
CASTPWKF1 m 7.8 3.27   5 1.46 0.419 4.0, 11.0 1.69
CASTWSBF1 f 6.5 2.12   2   1.5 0.326 5.0, 8.0 1.44
CASTWSBF1 m 3.0 0.0   1   0.0 0.0 3.0, 3.0 -1.32
NOD129SF1 f 5.0 0.0   1   0.0 0.0 5.0, 5.0 0.54
NOD129SF1 m 4.5 0.707   2   0.5 0.157 4.0, 5.0 -0.38
NODAF1 f 4.0 0.0   1   0.0 0.0 4.0, 4.0 -0.06
NODAF1 m 5.0 0.0   1   0.0 0.0 5.0, 5.0 -0.06
NODB6F1 f 2.0 0.0   1   0.0 0.0 2.0, 2.0 -1.26
NODB6F1 m 2.5 0.707   2   0.5 0.283 2.0, 3.0 -1.63
NODCASTF1 f 4.0 1.22   5 0.548 0.306 3.0, 6.0 -0.06
NODCASTF1 m 4.5 0.707   2   0.5 0.157 4.0, 5.0 -0.38
NODNZOF1 f 1.5 0.707   2   0.5 0.471 1.0, 2.0 -1.56
NODNZOF1 m 4.67 1.15   3 0.667 0.247 4.0, 6.0 -0.27
NODPWKF1 f 4.0 0.0   1   0.0 0.0 4.0, 4.0 -0.06
NZO129SF1 f 4.5 2.12   2   1.5 0.471 3.0, 6.0 0.24
NZO129SF1 m 2.0 0.0   1   0.0 0.0 2.0, 2.0 -1.94
NZOAF1 f 4.67 1.53   3 0.882 0.327 3.0, 6.0 0.34
NZOB6F1 m 4.0 0.0   1   0.0 0.0 4.0, 4.0 -0.69
NZONODF1 f 3.0 0.0   1   0.0 0.0 3.0, 3.0 -0.66
NZONODF1 m 6.0 4.24   2   3.0 0.707 3.0, 9.0 0.56
NZOWSBF1 f 5.33 4.73   3 2.73 0.886 0.74
PWK129SF1 f 4.75 2.5   4 1.25 0.526 2.0, 8.0 0.39
PWKAF1 f 3.5 3.54   2   2.5 1.01 1.0, 6.0 -0.36
PWKAF1 m 4.5 0.707   2   0.5 0.157 4.0, 5.0 -0.38
PWKB6F1 m 7.0 5.66   2   4.0 0.808 3.0, 11.0 1.19
PWKNODF1 f 5.0 0.0   1   0.0 0.0 5.0, 5.0 0.54
PWKNODF1 m 4.5 0.707   2   0.5 0.157 4.0, 5.0 -0.38
WSB129SF1 f 3.67 3.79   3 2.19 1.03 1.0, 8.0 -0.26
WSBAF1 f 6.0 0.0   1   0.0 0.0 6.0, 6.0 1.14
WSBAF1 m 6.0 2.83   2   2.0 0.471 4.0, 8.0 0.56
WSBB6F1 f 4.5 2.12   2   1.5 0.471 3.0, 6.0 0.24
WSBB6F1 m 4.0 1.0   3 0.577 0.25 3.0, 5.0 -0.69
WSBCASTF1 m 7.25 1.71   4 0.854 0.236 5.0, 9.0 1.35
WSB/EiJ f 1.5 0.707   2   0.5 0.471 1.0, 2.0 -1.56
WSBNODF1 m 8.0 2.83   2   2.0 0.354 6.0, 10.0 1.81
WSBNZOF1 f 5.0 1.1   6 0.447 0.219 3.0, 6.0 0.54
WSBNZOF1 m 4.5 0.707   2   0.5 0.157 4.0, 5.0 -0.38
WSBPWKF1 f 7.0 0.0   1   0.0 0.0 7.0, 7.0 1.74


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129SAF1 f 5.5 1.4213 8.3644 2.6356
129SAF1 m 6.0 1.1605 8.3388 3.6612
129SB6F1 f 2.5 1.4213 5.3644 0.0
129SB6F1 m 4.25 1.005 6.2755 2.2245
129SWSBF1 f 4.5 1.005 6.5255 2.4745
129SWSBF1 m 7.0 1.4213 9.8644 4.1356
B6NODF1 f 2.5 1.4213 5.3644 0.0
B6NODF1 m 4.5 1.4213 7.3644 1.6356
B6NZOF1 f 3.75 1.005 5.7755 1.7245
B6NZOF1 m 6.0 1.4213 8.8644 3.1356
CASTPWKF1 f 5.8 0.8989 7.6116 3.9884
CASTPWKF1 m 7.8 0.8989 9.6116 5.9884
NODCASTF1 f 4.0 0.8989 5.8116 2.1884
NODCASTF1 m 4.5 1.4213 7.3644 1.6356
NODNZOF1 f 1.5 1.4213 4.3644 0.0
NODNZOF1 m 4.6667 1.1605 7.0055 2.3279
PWKAF1 f 3.5 1.4213 6.3644 0.6356
PWKAF1 m 4.5 1.4213 7.3644 1.6356
WSBB6F1 f 4.5 1.4213 7.3644 1.6356
WSBB6F1 m 4.0 1.1605 6.3388 1.6612
WSBNZOF1 f 5.0 0.8206 6.6538 3.3462
WSBNZOF1 m 4.5 1.4213 7.3644 1.6356


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129SAF1 both 5.75 0.9174 7.599 3.901
129SB6F1 both 3.375 0.8704 5.1291 1.6209
129SWSBF1 both 5.75 0.8704 7.5041 3.9959
B6NODF1 both 3.5 1.005 5.5255 1.4745
B6NZOF1 both 4.875 0.8704 6.6291 3.1209
CASTPWKF1 both 6.8 0.6356 8.081 5.519
NODCASTF1 both 4.25 0.8408 5.9446 2.5554
NODNZOF1 both 3.0833 0.9174 4.9323 1.2344
PWKAF1 both 4.0 1.005 6.0255 1.9745
WSBB6F1 both 4.25 0.9174 6.099 2.401
WSBNZOF1 both 4.75 0.8206 6.4038 3.0962




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA