MPD: Data set: Rice1

Rice1: Using hair proteomics to distinguish 11 strains of mice (2012)

Rice RH, Bradshaw KM, Durbin-Johnson BP, Rocke DM, Eigenheer RA, Phinney BS, Sundberg JP. Differentiating inbred mouse strains from each other and those with single gene mutations using hair proteomics. PLoS One. 2012;7(12):e51956. doi: 10.1371/journal.pone.0051956. Epub 2012 Dec 14. PubMed 23251662 FullText

Procedures conducted:

• proteomic profiling

Hair proteomics analysis. Spectral counts for 46 specific proteins.

Rice1 downloads
• Download Rice1 project data set animal data, as uploaded
• Download Rice1 animal data matrix with factor-related expansion applied as necessary
• Download Rice1 strain means, SD, N, etc. one row per strain/sex/measure

Ontology terms mapped to Rice1 measures:

Investigators	Robert H Rice University of California, Davis, Davis, CA John P Sundberg The Jackson Laboratory, Bar Harbor, ME
Participants	Bradshaw KM, Durbin-Johnson BP, Rocke DM, Eigenheer RA, Phinney BS
Contact	Robert H Rice rhrice@ucdavis.edu Lab web site
Acknowledgements	Funding provided by NIH AR047204, AR056635, ES04699; North American Hair Research Society
Project type	Phenotype strain survey data set
MPD identifiers	Rice1 MPD:492
Data changelog	No updates/corrections. Initial release date: 12/2013.
Formatted citation	Click above to copy-paste the entire citation for this MPD web page.

Mice: inbred 11 strains ♀♂ age 10-19wks 1 experimental group

Sort/ Pick	Data set	Procedure / Protocol	Treatment	Phenotype Measure / Variable (click to view)	Panel	No. of Strains	Sex	Age	Sample Size (Avg)

Rice1:1	Rice1	proteomic profiling	(none)	2310061N02Rik protein, spectral counts, hair proteomics 2310061N02Rik 49201	inbred	11	both	10-19wks	N=2

Rice1:2	Rice1	proteomic profiling	(none)	ACGT1, spectral counts, hair proteomics Actg1 49202	inbred	11	both	10-19wks	N=2

Rice1:3	Rice1	proteomic profiling	(none)	ADH6B, spectral counts, hair proteomics Adh6b 49203	inbred	11	both	10-19wks	N=2

Rice1:4	Rice1	proteomic profiling	(none)	ASS1, spectral counts, hair proteomics Ass1 49204	inbred	11	both	10-19wks	N=2

Rice1:5	Rice1	proteomic profiling	(none)	CAPN12, spectral counts, hair proteomics Capn12 49205	inbred	11	both	10-19wks	N=2

Rice1:6	Rice1	proteomic profiling	(none)	CDSN, spectral counts, hair proteomics Cdsn 49206	inbred	11	both	10-19wks	N=2

Rice1:7	Rice1	proteomic profiling	(none)	CRISP1, spectral counts, hair proteomics Crisp1 49207	inbred	11	both	10-19wks	N=2

Rice1:8	Rice1	proteomic profiling	(none)	CTSB, spectral counts, hair proteomics Ctsb 49208	inbred	11	both	10-19wks	N=2

Rice1:9	Rice1	proteomic profiling	(none)	DSC2, spectral counts, hair proteomics Dsc2 49209	inbred	11	both	10-19wks	N=2

Rice1:10	Rice1	proteomic profiling	(none)	DUSP14, spectral counts, hair proteomics Dusp14 49210	inbred	11	both	10-19wks	N=2

Rice1:11	Rice1	proteomic profiling	(none)	EEF1A1, spectral counts, hair proteomics Eef1a1 49211	inbred	11	both	10-19wks	N=2

Rice1:12	Rice1	proteomic profiling	(none)	FABP4, spectral counts, hair proteomics Fabp4 49212	inbred	11	both	10-19wks	N=2

Rice1:13	Rice1	proteomic profiling	(none)	FABP5, spectral counts, hair proteomics Fabp5 49213	inbred	11	both	10-19wks	N=2

Rice1:14	Rice1	proteomic profiling	(none)	Gm11568, spectral counts, hair proteomics Gm11568 49214	inbred	11	both	10-19wks	N=2

Rice1:17	Rice1	proteomic profiling	(none)	HIST1H2BP, spectral counts, hair proteomics Hist1h2bp 49217	inbred	11	both	10-19wks	N=2

Rice1:18	Rice1	proteomic profiling	(none)	HIST1H4A, spectral counts, hair proteomics Hist1h4a 49218	inbred	11	both	10-19wks	N=2

Rice1:19	Rice1	proteomic profiling	(none)	KRT16, spectral counts, hair proteomics Krt16 49219	inbred	11	both	10-19wks	N=2

Rice1:20	Rice1	proteomic profiling	(none)	KRT17, spectral counts, hair proteomics Krt17 49220	inbred	11	both	10-19wks	N=2

Rice1:21	Rice1	proteomic profiling	(none)	KRT31, spectral counts, hair proteomics Krt31 49221	inbred	11	both	10-19wks	N=2

Rice1:22	Rice1	proteomic profiling	(none)	KRT32, spectral counts, hair proteomics Krt32 49222	inbred	11	both	10-19wks	N=2

Rice1:23	Rice1	proteomic profiling	(none)	KRT75, spectral counts, hair proteomics Krt75 49223	inbred	11	both	10-19wks	N=2

Rice1:24	Rice1	proteomic profiling	(none)	KRT81, spectral counts, hair proteomics Krt81 49224	inbred	11	both	10-19wks	N=2

Rice1:25	Rice1	proteomic profiling	(none)	KRT82, spectral counts, hair proteomics Krt82 49225	inbred	11	both	10-19wks	N=2

Rice1:26	Rice1	proteomic profiling	(none)	KRT83, spectral counts, hair proteomics Krt83 49226	inbred	11	both	10-19wks	N=2

Rice1:27	Rice1	proteomic profiling	(none)	KRT84, spectral counts, hair proteomics Krt84 49227	inbred	11	both	10-19wks	N=2

Rice1:28	Rice1	proteomic profiling	(none)	KRTAP3-2, spectral counts, hair proteomics Krtap3_2 49228	inbred	11	both	10-19wks	N=2

Rice1:29	Rice1	proteomic profiling	(none)	KRTAP4-6, spectral counts, hair proteomics Krtap4_6 49229	inbred	11	both	10-19wks	N=2

Rice1:30	Rice1	proteomic profiling	(none)	KRTAP6-2, spectral counts, hair proteomics Krtap6_2 49230	inbred	11	both	10-19wks	N=2

Rice1:31	Rice1	proteomic profiling	(none)	KRTAP11-1, spectral counts, hair proteomics Krtap11_1 49231	inbred	11	both	10-19wks	N=2

Rice1:32	Rice1	proteomic profiling	(none)	KRTAP13-1, spectral counts, hair proteomics Krtap13_1 49232	inbred	11	both	10-19wks	N=2

Rice1:33	Rice1	proteomic profiling	(none)	KRTAP14, spectral counts, hair proteomics Krtap14 49233	inbred	11	both	10-19wks	N=2

Rice1:34	Rice1	proteomic profiling	(none)	KRTAP15, spectral counts, hair proteomics Krtap15 49234	inbred	11	both	10-19wks	N=2

Rice1:35	Rice1	proteomic profiling	(none)	KRTAP16-1, spectral counts, hair proteomics Krtap16_1 49235	inbred	11	both	10-19wks	N=2

Rice1:36	Rice1	proteomic profiling	(none)	KRTAP19-1, spectral counts, hair proteomics Krtap19_1 49236	inbred	11	both	10-19wks	N=2

Rice1:37	Rice1	proteomic profiling	(none)	KRTAP19-3, spectral counts, hair proteomics Krtap19_3 49237	inbred	11	both	10-19wks	N=2

Rice1:38	Rice1	proteomic profiling	(none)	KRTAP19-4, spectral counts, hair proteomics Krtap19_4 49238	inbred	11	both	10-19wks	N=2

Rice1:39	Rice1	proteomic profiling	(none)	KRTAP19-5), spectral counts, hair proteomics Krtap19_5 49239	inbred	11	both	10-19wks	N=2

Rice1:40	Rice1	proteomic profiling	(none)	LGALS7, spectral counts, hair proteomics Lgals7 49240	inbred	11	both	10-19wks	N=2

Rice1:41	Rice1	proteomic profiling	(none)	ME1, spectral counts, hair proteomics Me1 49241	inbred	11	both	10-19wks	N=2

Rice1:42	Rice1	proteomic profiling	(none)	MLF1, spectral counts, hair proteomics Mlf1 49242	inbred	11	both	10-19wks	N=2

Rice1:43	Rice1	proteomic profiling	(none)	PKP1, spectral counts, hair proteomics Pkp1 49243	inbred	11	both	10-19wks	N=2

Rice1:44	Rice1	proteomic profiling	(none)	S100A3, spectral counts, hair proteomics S100a3 49244	inbred	11	both	10-19wks	N=2

Rice1:45	Rice1	proteomic profiling	(none)	SFN, spectral counts, hair proteomics Sfn 49245	inbred	11	both	10-19wks	N=2

Rice1:46	Rice1	proteomic profiling	(none)	TCHHL1, spectral counts, hair proteomics Tchhl1 49246	inbred	11	both	10-19wks	N=2

Rice1:47	Rice1	proteomic profiling	(none)	TUBB2A, spectral counts, hair proteomics Tubb2a 49247	inbred	11	both	10-19wks	N=2

Rice1:48	Rice1	proteomic profiling	(none)	VSIG8, spectral counts, hair proteomics Vsig8 49248	inbred	11	both	10-19wks	N=2

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