Project measure / variable:   Rice1   Me1

ID, description, units MPD:49241   Me1   ME1, spectral counts, hair proteomics    
Data set, strains Rice1   inbred   11 strains     sex: both     age: 10-19wks
Procedure proteomic profiling
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rice1 - ME1, spectral counts, hair proteomics



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means0.636   None 0.705   None
Median of the strain means0   None 0.500   None
SD of the strain means± 0.931 ± 0.773
Coefficient of variation (CV)1.46 1.10
Min–max range of strain means0   –   2.25   None 0   –   2.25   None
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0511 0.0511 0.1059 0.748
strain 10 26.5341 2.6534 5.4941 0.0004
sex:strain 10 2.7614 0.2761 0.5718 0.8192
Residuals 22 10.625 0.483


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
C3H/HeJ f 0.0 0.0   2   0.0 0.0 -0.68
C3H/HeJ m 0.5 0.707   2   0.5 1.41 -0.26
C57BL/6J f 0.0 0.0   2   0.0 0.0 -0.68
C57BL/6J m 0.0 0.0   2   0.0 0.0 -0.91
CAST/EiJ f 0.0 0.0   2   0.0 0.0 -0.68
CAST/EiJ m 0.0 0.0   2   0.0 0.0 -0.91
DBA/1J f 0.0 0.0   2   0.0 0.0 -0.68
DBA/1J m 0.0 0.0   2   0.0 0.0 -0.91
MRL/MpJ f 1.75 0.354   2   0.25 0.202 1.5, 2.0 1.2
MRL/MpJ m 1.75 0.354   2   0.25 0.202 1.5, 2.0 1.35
MRL/MpJ Faslpr-Foxq1sa-J/J f 2.25 1.06   2   0.75 0.471 1.5, 3.0 1.73
MRL/MpJ Faslpr-Foxq1sa-J/J m 1.25 1.77   2   1.25 1.41 0.71
NOD/ShiLtJ f 1.0 1.41   2   1.0 1.41 0.39
NOD/ShiLtJ m 0.5 0.707   2   0.5 1.41 -0.26
NZW/LacJ f 0.0 0.0   2   0.0 0.0 -0.68
NZW/LacJ m 1.0 1.41   2   1.0 1.41 0.38
SB/LeJ f 2.0 0.707   2   0.5 0.354 1.5, 2.5 1.46
SB/LeJ m 2.25 0.354   2   0.25 0.157 2.0, 2.5 2.0
STOCK a/a Tmem79ma Flgft/J f 0.0 0.0   2   0.0 0.0 -0.68
STOCK a/a Tmem79ma Flgft/J m 0.0 0.0   2   0.0 0.0 -0.91
WSB/EiJ f 0.0 0.0   2   0.0 0.0 -0.68
WSB/EiJ m 0.5 0.707   2   0.5 1.41 -0.26


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ f 0.0 0.4914 1.0191 -1.0191
C3H/HeJ m 0.5 0.4914 1.5191 -0.5191
C57BL/6J f 0.0 0.4914 1.0191 -1.0191
C57BL/6J m 0.0 0.4914 1.0191 -1.0191
CAST/EiJ f 0.0 0.4914 1.0191 -1.0191
CAST/EiJ m 0.0 0.4914 1.0191 -1.0191
DBA/1J f 0.0 0.4914 1.0191 -1.0191
DBA/1J m 0.0 0.4914 1.0191 -1.0191
MRL/MpJ f 1.75 0.4914 2.7691 0.7309
MRL/MpJ m 1.75 0.4914 2.7691 0.7309
MRL/MpJ Faslpr-Foxq1sa-J/J f 2.25 0.4914 3.2691 1.2309
MRL/MpJ Faslpr-Foxq1sa-J/J m 1.25 0.4914 2.2691 0.2309
NOD/ShiLtJ f 1.0 0.4914 2.0191 -0.0191
NOD/ShiLtJ m 0.5 0.4914 1.5191 -0.5191
NZW/LacJ f 0.0 0.4914 1.0191 -1.0191
NZW/LacJ m 1.0 0.4914 2.0191 -0.0191
SB/LeJ f 2.0 0.4914 3.0191 0.9809
SB/LeJ m 2.25 0.4914 3.2691 1.2309
STOCK a/a Tmem79ma Flgft/J f 0.0 0.4914 1.0191 -1.0191
STOCK a/a Tmem79ma Flgft/J m 0.0 0.4914 1.0191 -1.0191
WSB/EiJ f 0.0 0.4914 1.0191 -1.0191
WSB/EiJ m 0.5 0.4914 1.5191 -0.5191


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ both 0.25 0.3475 0.9706 -0.4706
C57BL/6J both 0.0 0.3475 0.7206 -0.7206
CAST/EiJ both 0.0 0.3475 0.7206 -0.7206
DBA/1J both 0.0 0.3475 0.7206 -0.7206
MRL/MpJ both 1.75 0.3475 2.4706 1.0294
MRL/MpJ Faslpr-Foxq1sa-J/J both 1.75 0.3475 2.4706 1.0294
NOD/ShiLtJ both 0.75 0.3475 1.4706 0.0294
NZW/LacJ both 0.5 0.3475 1.2206 -0.2206
SB/LeJ both 2.125 0.3475 2.8456 1.4044
STOCK a/a Tmem79ma Flgft/J both 0.0 0.3475 0.7206 -0.7206
WSB/EiJ both 0.25 0.3475 0.9706 -0.4706




  GWAS USING LINEAR MIXED MODELS