Phenotype measure:   Rice1   Cdsn

ID, description, units MPD:49206   Cdsn   CDSN, spectral counts, hair proteomics     measure
Data set, strains Rice1   inbred   11 strains     sex: both     age: 10-19wks
Procedure proteomic profiling
Ontology mappings

  STRAIN COMPARISON PLOT
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Rice1 - CDSN, spectral counts, hair proteomics



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means3.23   None 3.00   None
Median of the strain means2.50   None 4.50   None
SD of the strain means± 3.55 ± 2.57
Coefficient of variation (CV)1.10 0.856
Min–max range of strain means0   –   10.0   None 0   –   5.50   None
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.5682 0.5682 0.3333 0.5696
strain 10 315.1818 31.5182 18.4907 < 0.0001
sex:strain 10 69.1818 6.9182 4.0587 0.0029
Residuals 22 37.5 1.7045


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
C3H/HeJ f 0.0 0.0   2   0.0 0.0 -0.91
C3H/HeJ m 0.0 0.0   2   0.0 0.0 -1.17
C57BL/6J f 6.5 2.12   2   1.5 0.326 5.0, 8.0 0.92
C57BL/6J m 4.5 2.12   2   1.5 0.471 3.0, 6.0 0.58
CAST/EiJ f 10.0 1.41   2   1.0 0.141 9.0, 11.0 1.91
CAST/EiJ m 5.0 0.0   2   0.0 0.0 5.0, 5.0 0.78
DBA/1J f 0.0 0.0   2   0.0 0.0 -0.91
DBA/1J m 5.0 1.41   2   1.0 0.283 4.0, 6.0 0.78
MRL/MpJ f 6.0 0.0   2   0.0 0.0 6.0, 6.0 0.78
MRL/MpJ m 5.5 0.707   2   0.5 0.129 5.0, 6.0 0.97
MRL/MpJ Faslpr-Foxq1sa-J/J f 0.0 0.0   2   0.0 0.0 -0.91
MRL/MpJ Faslpr-Foxq1sa-J/J m 0.0 0.0   2   0.0 0.0 -1.17
NOD/ShiLtJ f 0.0 0.0   2   0.0 0.0 -0.91
NOD/ShiLtJ m 0.0 0.0   2   0.0 0.0 -1.17
NZW/LacJ f 6.0 1.41   2   1.0 0.236 5.0, 7.0 0.78
NZW/LacJ m 5.5 0.707   2   0.5 0.129 5.0, 6.0 0.97
SB/LeJ f 0.0 0.0   2   0.0 0.0 -0.91
SB/LeJ m 0.0 0.0   2   0.0 0.0 -1.17
STOCK a/a Tmem79ma Flgft/J f 4.5 0.707   2   0.5 0.157 4.0, 5.0 0.36
STOCK a/a Tmem79ma Flgft/J m 2.0 2.83   2   2.0 1.41 -0.39
WSB/EiJ f 2.5 3.54   2   2.5 1.41 -0.2
WSB/EiJ m 5.5 0.707   2   0.5 0.129 5.0, 6.0 0.97


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ f 0.0 0.9232 1.9146 -1.9146
C3H/HeJ m 0.0 0.9232 1.9146 -1.9146
C57BL/6J f 6.5 0.9232 8.4146 4.5854
C57BL/6J m 4.5 0.9232 6.4146 2.5854
CAST/EiJ f 10.0 0.9232 11.9146 8.0854
CAST/EiJ m 5.0 0.9232 6.9146 3.0854
DBA/1J f 0.0 0.9232 1.9146 -1.9146
DBA/1J m 5.0 0.9232 6.9146 3.0854
MRL/MpJ f 6.0 0.9232 7.9146 4.0854
MRL/MpJ m 5.5 0.9232 7.4146 3.5854
MRL/MpJ Faslpr-Foxq1sa-J/J f 0.0 0.9232 1.9146 -1.9146
MRL/MpJ Faslpr-Foxq1sa-J/J m 0.0 0.9232 1.9146 -1.9146
NOD/ShiLtJ f 0.0 0.9232 1.9146 -1.9146
NOD/ShiLtJ m 0.0 0.9232 1.9146 -1.9146
NZW/LacJ f 6.0 0.9232 7.9146 4.0854
NZW/LacJ m 5.5 0.9232 7.4146 3.5854
SB/LeJ f 0.0 0.9232 1.9146 -1.9146
SB/LeJ m 0.0 0.9232 1.9146 -1.9146
STOCK a/a Tmem79ma Flgft/J f 4.5 0.9232 6.4146 2.5854
STOCK a/a Tmem79ma Flgft/J m 2.0 0.9232 3.9146 0.0854
WSB/EiJ f 2.5 0.9232 4.4146 0.5854
WSB/EiJ m 5.5 0.9232 7.4146 3.5854


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ both 0.0 0.6528 1.3538 -1.3538
C57BL/6J both 5.5 0.6528 6.8538 4.1462
CAST/EiJ both 7.5 0.6528 8.8538 6.1462
DBA/1J both 2.5 0.6528 3.8538 1.1462
MRL/MpJ both 5.75 0.6528 7.1038 4.3962
MRL/MpJ Faslpr-Foxq1sa-J/J both 0.0 0.6528 1.3538 -1.3538
NOD/ShiLtJ both 0.0 0.6528 1.3538 -1.3538
NZW/LacJ both 5.75 0.6528 7.1038 4.3962
SB/LeJ both 0.0 0.6528 1.3538 -1.3538
STOCK a/a Tmem79ma Flgft/J both 3.25 0.6528 4.6038 1.8962
WSB/EiJ both 4.0 0.6528 5.3538 2.6462




GWAS analysis not available: At least 12 strains are required