Project measure / variable:   Rice1   Krt17

ID, description, units MPD:49220   Krt17   KRT17, spectral counts, hair proteomics    
Data set, strains Rice1   inbred   11 strains     sex: both     age: 10-19wks
Procedure proteomic profiling
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rice1 - KRT17, spectral counts, hair proteomics



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means58.9   None 52.2   None
Median of the strain means67.9   None 54.7   None
SD of the strain means± 29.6 ± 27.2
Coefficient of variation (CV)0.503 0.520
Min–max range of strain means2.50   –   93.7   None 1.50   –   91.4   None
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 490.4123 490.4123 5.9906 0.0228
strain 10 30244.989 3024.4989 36.9454 < 0.0001
sex:strain 10 2010.6561 201.0656 2.4561 0.0379
Residuals 22 1801.0082 81.864


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
C3H/HeJ f 70.7 8.72   2   6.17 0.123 64.5, 76.8 0.4
C3H/HeJ m 70.5 2.99   2   2.12 0.0424 68.4, 72.6 0.68
C57BL/6J f 84.8 4.15   2   2.94 0.049 81.8, 87.7 0.88
C57BL/6J m 91.4 23.1   2   16.3 0.253 75.0, 108.0 1.45
CAST/EiJ f 74.6 0.583   2   0.412 0.00781 74.2, 75.0 0.53
CAST/EiJ m 70.5 2.62   2   1.86 0.0372 68.7, 72.4 0.68
DBA/1J f 52.8 0.74   2   0.523 0.014 52.2, 53.3 -0.2
DBA/1J m 54.7 0.0537   2   0.038 0.000982 54.7, 54.7 0.09
MRL/MpJ f 77.4 4.45   2   3.14 0.0574 74.2, 80.5 0.63
MRL/MpJ m 60.9 10.4   2   7.34 0.17 53.5, 68.2 0.32
MRL/MpJ Faslpr-Foxq1sa-J/J f 2.5 3.54   2   2.5 1.41 -1.9
MRL/MpJ Faslpr-Foxq1sa-J/J m 1.5 2.12   2   1.5 1.41 -1.87
NOD/ShiLtJ f 67.9 14.6   2   10.3 0.215 57.6, 78.2 0.31
NOD/ShiLtJ m 51.8 1.58   2   1.12 0.0305 50.7, 52.9 -0.01
NZW/LacJ f 58.6 7.57   2   5.35 0.129 53.3, 64.0 -0.01
NZW/LacJ m 43.0 3.16   2   2.24 0.0735 40.8, 45.2 -0.34
SB/LeJ f 5.5 0.707   2   0.5 0.129 5.0, 6.0 -1.8
SB/LeJ m 6.0 0.0   2   0.0 0.0 6.0, 6.0 -1.7
STOCK a/a Tmem79ma Flgft/J f 93.7 21.2   2   15.0 0.227 78.7, 109.0 1.18
STOCK a/a Tmem79ma Flgft/J m 54.3 7.73   2   5.46 0.142 48.8, 59.8 0.08
WSB/EiJ f 58.9 11.9   2   8.43 0.202 50.5, 67.3 0.0
WSB/EiJ m 69.2 8.82   2   6.24 0.127 63.0, 75.5 0.63


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ f 70.6595 6.3978 83.9278 57.3912
C3H/HeJ m 70.516 6.3978 83.7843 57.2477
C57BL/6J f 84.765 6.3978 98.0333 71.4967
C57BL/6J m 91.371 6.3978 104.6393 78.1027
CAST/EiJ f 74.578 6.3978 87.8463 61.3097
CAST/EiJ m 70.5325 6.3978 83.8008 57.2642
DBA/1J f 52.772 6.3978 66.0403 39.5037
DBA/1J m 54.702 6.3978 67.9703 41.4337
MRL/MpJ f 77.3855 6.3978 90.6538 64.1172
MRL/MpJ m 60.8565 6.3978 74.1248 47.5882
MRL/MpJ Faslpr-Foxq1sa-J/J f 2.5 6.3978 15.7683 0.0
MRL/MpJ Faslpr-Foxq1sa-J/J m 1.5 6.3978 14.7683 0.0
NOD/ShiLtJ f 67.9045 6.3978 81.1728 54.6362
NOD/ShiLtJ m 51.7925 6.3978 65.0608 38.5242
NZW/LacJ f 58.6245 6.3978 71.8928 45.3562
NZW/LacJ m 43.015 6.3978 56.2833 29.7467
SB/LeJ f 5.5 6.3978 18.7683 0.0
SB/LeJ m 6.0 6.3978 19.2683 0.0
STOCK a/a Tmem79ma Flgft/J f 93.694 6.3978 106.9623 80.4257
STOCK a/a Tmem79ma Flgft/J m 54.294 6.3978 67.5623 41.0257
WSB/EiJ f 58.881 6.3978 72.1493 45.6127
WSB/EiJ m 69.237 6.3978 82.5053 55.9687


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ both 70.5878 4.5239 79.9698 61.2057
C57BL/6J both 88.068 4.5239 97.4501 78.6859
CAST/EiJ both 72.5552 4.5239 81.9373 63.1732
DBA/1J both 53.737 4.5239 63.1191 44.3549
MRL/MpJ both 69.121 4.5239 78.5031 59.7389
MRL/MpJ Faslpr-Foxq1sa-J/J both 2.0 4.5239 11.3821 0.0
NOD/ShiLtJ both 59.8485 4.5239 69.2306 50.4664
NZW/LacJ both 50.8197 4.5239 60.2018 41.4377
SB/LeJ both 5.75 4.5239 15.1321 0.0
STOCK a/a Tmem79ma Flgft/J both 73.994 4.5239 83.3761 64.6119
WSB/EiJ both 64.059 4.5239 73.4411 54.6769




  GWAS USING LINEAR MIXED MODELS