Project measure / variable:   Rice1   Crisp1

ID, description, units MPD:49207   Crisp1   CRISP1, spectral counts, hair proteomics    
Data set, strains Rice1   inbred   11 strains     sex: both     age: 10-19wks
Procedure proteomic profiling
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rice1 - CRISP1, spectral counts, hair proteomics



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means3.95   None 2.86   None
Median of the strain means4.50   None 3.00   None
SD of the strain means± 2.85 ± 2.16
Coefficient of variation (CV)0.721 0.753
Min–max range of strain means0   –   9.00   None 0   –   6.50   None
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 13.0909 13.0909 4.6452 0.0423
strain 10 231.6364 23.1636 8.2194 < 0.0001
sex:strain 10 23.9091 2.3909 0.8484 0.5904
Residuals 22 62.0 2.8182


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
C3H/HeJ f 1.0 1.41   2   1.0 1.41 -1.04
C3H/HeJ m 1.0 1.41   2   1.0 1.41 -0.86
C57BL/6J f 6.5 0.707   2   0.5 0.109 6.0, 7.0 0.89
C57BL/6J m 3.0 0.0   2   0.0 0.0 3.0, 3.0 0.06
CAST/EiJ f 5.0 0.0   2   0.0 0.0 5.0, 5.0 0.37
CAST/EiJ m 2.0 0.0   2   0.0 0.0 2.0, 2.0 -0.4
DBA/1J f 3.0 0.0   2   0.0 0.0 3.0, 3.0 -0.33
DBA/1J m 3.0 0.0   2   0.0 0.0 3.0, 3.0 0.06
MRL/MpJ f 9.0 4.24   2   3.0 0.471 6.0, 12.0 1.77
MRL/MpJ m 6.5 3.54   2   2.5 0.544 4.0, 9.0 1.69
MRL/MpJ Faslpr-Foxq1sa-J/J f 0.0 0.0   2   0.0 0.0 -1.39
MRL/MpJ Faslpr-Foxq1sa-J/J m 0.0 0.0   2   0.0 0.0 -1.33
NOD/ShiLtJ f 4.5 0.707   2   0.5 0.157 4.0, 5.0 0.19
NOD/ShiLtJ m 5.5 0.707   2   0.5 0.129 5.0, 6.0 1.22
NZW/LacJ f 4.5 0.707   2   0.5 0.157 4.0, 5.0 0.19
NZW/LacJ m 2.0 0.0   2   0.0 0.0 2.0, 2.0 -0.4
SB/LeJ f 0.0 0.0   2   0.0 0.0 -1.39
SB/LeJ m 0.0 0.0   2   0.0 0.0 -1.33
STOCK a/a Tmem79ma Flgft/J f 3.5 0.707   2   0.5 0.202 3.0, 4.0 -0.16
STOCK a/a Tmem79ma Flgft/J m 3.5 0.707   2   0.5 0.202 3.0, 4.0 0.29
WSB/EiJ f 6.5 4.95   2   3.5 0.761 3.0, 10.0 0.89
WSB/EiJ m 5.0 0.0   2   0.0 0.0 5.0, 5.0 0.99


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ f 1.0 1.1871 3.4618 -1.4618
C3H/HeJ m 1.0 1.1871 3.4618 -1.4618
C57BL/6J f 6.5 1.1871 8.9618 4.0382
C57BL/6J m 3.0 1.1871 5.4618 0.5382
CAST/EiJ f 5.0 1.1871 7.4618 2.5382
CAST/EiJ m 2.0 1.1871 4.4618 -0.4618
DBA/1J f 3.0 1.1871 5.4618 0.5382
DBA/1J m 3.0 1.1871 5.4618 0.5382
MRL/MpJ f 9.0 1.1871 11.4618 6.5382
MRL/MpJ m 6.5 1.1871 8.9618 4.0382
MRL/MpJ Faslpr-Foxq1sa-J/J f 0.0 1.1871 2.4618 -2.4618
MRL/MpJ Faslpr-Foxq1sa-J/J m 0.0 1.1871 2.4618 -2.4618
NOD/ShiLtJ f 4.5 1.1871 6.9618 2.0382
NOD/ShiLtJ m 5.5 1.1871 7.9618 3.0382
NZW/LacJ f 4.5 1.1871 6.9618 2.0382
NZW/LacJ m 2.0 1.1871 4.4618 -0.4618
SB/LeJ f 0.0 1.1871 2.4618 -2.4618
SB/LeJ m 0.0 1.1871 2.4618 -2.4618
STOCK a/a Tmem79ma Flgft/J f 3.5 1.1871 5.9618 1.0382
STOCK a/a Tmem79ma Flgft/J m 3.5 1.1871 5.9618 1.0382
WSB/EiJ f 6.5 1.1871 8.9618 4.0382
WSB/EiJ m 5.0 1.1871 7.4618 2.5382


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ both 1.0 0.8394 2.7408 -0.7408
C57BL/6J both 4.75 0.8394 6.4908 3.0092
CAST/EiJ both 3.5 0.8394 5.2408 1.7592
DBA/1J both 3.0 0.8394 4.7408 1.2592
MRL/MpJ both 7.75 0.8394 9.4908 6.0092
MRL/MpJ Faslpr-Foxq1sa-J/J both 0.0 0.8394 1.7408 -1.7408
NOD/ShiLtJ both 5.0 0.8394 6.7408 3.2592
NZW/LacJ both 3.25 0.8394 4.9908 1.5092
SB/LeJ both 0.0 0.8394 1.7408 -1.7408
STOCK a/a Tmem79ma Flgft/J both 3.5 0.8394 5.2408 1.7592
WSB/EiJ both 5.75 0.8394 7.4908 4.0092




  GWAS USING LINEAR MIXED MODELS