Project measure / variable:   Rice1   Krtap15

ID, description, units MPD:49234   Krtap15   KRTAP15, spectral counts, hair proteomics    
Data set, strains Rice1   inbred   11 strains     sex: both     age: 10-19wks
Procedure proteomic profiling
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rice1 - KRTAP15, spectral counts, hair proteomics



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means87.3   None 87.3   None
Median of the strain means82.0   None 88.1   None
SD of the strain means± 16.6 ± 17.1
Coefficient of variation (CV)0.190 0.196
Min–max range of strain means64.0   –   121   None 62.5   –   117   None
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0001 0.0001 0.0 0.9994
strain 10 10238.2409 1023.8241 4.8045 0.001
sex:strain 10 977.9922 97.7992 0.4589 0.8987
Residuals 22 4688.1132 213.0961


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
C3H/HeJ f 73.0 22.6   2   16.0 0.31 57.0, 89.0 -0.86
C3H/HeJ m 62.5 2.12   2   1.5 0.0339 61.0, 64.0 -1.45
C57BL/6J f 100.0 26.9   2   19.0 0.269 81.0, 119.0 0.77
C57BL/6J m 108.0 29.7   2   21.0 0.275 87.0, 129.0 1.21
CAST/EiJ f 77.5 23.3   2   16.5 0.301 61.0, 94.0 -0.59
CAST/EiJ m 68.5 7.78   2   5.5 0.114 63.0, 74.0 -1.1
DBA/1J f 102.0 19.9   2   14.1 0.195 88.0, 116.0 0.89
DBA/1J m 104.0 1.27   2   0.9 0.0122 103.0, 105.0 0.98
MRL/MpJ f 101.0 14.4   2   10.2 0.142 90.9, 111.0 0.83
MRL/MpJ m 88.1 7.34   2   5.19 0.0833 82.9, 93.3 0.05
MRL/MpJ Faslpr-Foxq1sa-J/J f 82.2 14.4   2   10.2 0.175 72.0, 92.4 -0.31
MRL/MpJ Faslpr-Foxq1sa-J/J m 71.9 8.3   2   5.87 0.115 66.0, 77.7 -0.9
NOD/ShiLtJ f 79.6 4.77   2   3.38 0.0599 76.2, 83.0 -0.47
NOD/ShiLtJ m 81.8 7.7   2   5.45 0.0942 76.4, 87.3 -0.32
NZW/LacJ f 78.2 13.0   2   9.2 0.166 69.0, 87.4 -0.55
NZW/LacJ m 90.2 21.7   2   15.3 0.24 74.9, 106.0 0.17
SB/LeJ f 121.0 10.8   2   7.65 0.0898 113.0, 128.0 2.03
SB/LeJ m 117.0 10.6   2   7.51 0.0911 109.0, 124.0 1.74
STOCK a/a Tmem79ma Flgft/J f 64.0 7.07   2   5.0 0.11 59.0, 69.0 -1.41
STOCK a/a Tmem79ma Flgft/J m 78.6 0.528   2   0.373 0.00671 78.3, 79.0 -0.51
WSB/EiJ f 82.0 2.83   2   2.0 0.0345 80.0, 84.0 -0.32
WSB/EiJ m 90.0 4.18   2   2.95 0.0464 87.0, 92.9 0.16


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ f 73.0 10.3222 94.407 51.593
C3H/HeJ m 62.5 10.3222 83.907 41.093
C57BL/6J f 100.0 10.3222 121.407 78.593
C57BL/6J m 107.9805 10.3222 129.3875 86.5735
CAST/EiJ f 77.5 10.3222 98.907 56.093
CAST/EiJ m 68.5 10.3222 89.907 47.093
DBA/1J f 102.042 10.3222 123.449 80.635
DBA/1J m 104.1 10.3222 125.507 82.693
MRL/MpJ f 101.135 10.3222 122.542 79.728
MRL/MpJ m 88.088 10.3222 109.495 66.681
MRL/MpJ Faslpr-Foxq1sa-J/J f 82.1805 10.3222 103.5875 60.7735
MRL/MpJ Faslpr-Foxq1sa-J/J m 71.8655 10.3222 93.2725 50.4585
NOD/ShiLtJ f 79.625 10.3222 101.032 58.218
NOD/ShiLtJ m 81.812 10.3222 103.219 60.405
NZW/LacJ f 78.204 10.3222 99.611 56.797
NZW/LacJ m 90.233 10.3222 111.64 68.826
SB/LeJ f 120.515 10.3222 141.922 99.108
SB/LeJ m 116.579 10.3222 137.986 95.172
STOCK a/a Tmem79ma Flgft/J f 64.0 10.3222 85.407 42.593
STOCK a/a Tmem79ma Flgft/J m 78.627 10.3222 100.034 57.22
WSB/EiJ f 82.0 10.3222 103.407 60.593
WSB/EiJ m 89.9545 10.3222 111.3615 68.5475


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ both 67.75 7.2989 82.887 52.613
C57BL/6J both 103.9902 7.2989 119.1273 88.8532
CAST/EiJ both 73.0 7.2989 88.137 57.863
DBA/1J both 103.071 7.2989 118.208 87.934
MRL/MpJ both 94.6115 7.2989 109.7485 79.4745
MRL/MpJ Faslpr-Foxq1sa-J/J both 77.023 7.2989 92.16 61.886
NOD/ShiLtJ both 80.7185 7.2989 95.8555 65.5815
NZW/LacJ both 84.2185 7.2989 99.3555 69.0815
SB/LeJ both 118.547 7.2989 133.684 103.41
STOCK a/a Tmem79ma Flgft/J both 71.3135 7.2989 86.4505 56.1765
WSB/EiJ both 85.9772 7.2989 101.1143 70.8402




  GWAS USING LINEAR MIXED MODELS