Project measure / variable:   Rice1   Krtap14

ID, description, units MPD:49233   Krtap14   KRTAP14, spectral counts, hair proteomics    
Data set, strains Rice1   inbred   11 strains     sex: both     age: 10-19wks
Procedure proteomic profiling
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rice1 - KRTAP14, spectral counts, hair proteomics



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means28.8   None 31.5   None
Median of the strain means33.5   None 31.5   None
SD of the strain means± 9.89 ± 8.77
Coefficient of variation (CV)0.344 0.278
Min–max range of strain means8.00   –   39.0   None 13.0   –   41.0   None
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 81.8182 81.8182 2.2167 0.1507
strain 10 3156.6818 315.6682 8.5526 < 0.0001
sex:strain 10 336.6818 33.6682 0.9122 0.5393
Residuals 22 812.0 36.9091


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
C3H/HeJ f 19.0 4.24   2   3.0 0.223 16.0, 22.0 -0.99
C3H/HeJ m 19.5 3.54   2   2.5 0.181 17.0, 22.0 -1.37
C57BL/6J f 31.0 0.0   2   0.0 0.0 31.0, 31.0 0.23
C57BL/6J m 29.0 0.0   2   0.0 0.0 29.0, 29.0 -0.28
CAST/EiJ f 8.0 11.3   2   8.0 1.41 -2.1
CAST/EiJ m 13.0 18.4   2   13.0 1.41 -2.11
DBA/1J f 34.0 4.24   2   3.0 0.125 31.0, 37.0 0.53
DBA/1J m 41.0 11.3   2   8.0 0.276 33.0, 49.0 1.08
MRL/MpJ f 39.0 4.24   2   3.0 0.109 36.0, 42.0 1.03
MRL/MpJ m 37.5 2.12   2   1.5 0.0566 36.0, 39.0 0.68
MRL/MpJ Faslpr-Foxq1sa-J/J f 29.0 2.83   2   2.0 0.0975 27.0, 31.0 0.02
MRL/MpJ Faslpr-Foxq1sa-J/J m 37.5 2.12   2   1.5 0.0566 36.0, 39.0 0.68
NOD/ShiLtJ f 33.5 3.54   2   2.5 0.106 31.0, 36.0 0.48
NOD/ShiLtJ m 31.5 0.707   2   0.5 0.0224 31.0, 32.0 0.0
NZW/LacJ f 34.0 1.41   2   1.0 0.0416 33.0, 35.0 0.53
NZW/LacJ m 29.5 3.54   2   2.5 0.12 27.0, 32.0 -0.23
SB/LeJ f 37.0 4.24   2   3.0 0.115 34.0, 40.0 0.83
SB/LeJ m 36.0 1.41   2   1.0 0.0393 35.0, 37.0 0.51
STOCK a/a Tmem79ma Flgft/J f 16.5 4.95   2   3.5 0.3 13.0, 20.0 -1.24
STOCK a/a Tmem79ma Flgft/J m 31.0 7.07   2   5.0 0.228 26.0, 36.0 -0.06
WSB/EiJ f 35.5 3.54   2   2.5 0.0996 33.0, 38.0 0.68
WSB/EiJ m 41.0 0.0   2   0.0 0.0 41.0, 41.0 1.08


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ f 19.0 4.2959 27.9091 10.0909
C3H/HeJ m 19.5 4.2959 28.4091 10.5909
C57BL/6J f 31.0 4.2959 39.9091 22.0909
C57BL/6J m 29.0 4.2959 37.9091 20.0909
CAST/EiJ f 8.0 4.2959 16.9091 0.0
CAST/EiJ m 13.0 4.2959 21.9091 4.0909
DBA/1J f 34.0 4.2959 42.9091 25.0909
DBA/1J m 41.0 4.2959 49.9091 32.0909
MRL/MpJ f 39.0 4.2959 47.9091 30.0909
MRL/MpJ m 37.5 4.2959 46.4091 28.5909
MRL/MpJ Faslpr-Foxq1sa-J/J f 29.0 4.2959 37.9091 20.0909
MRL/MpJ Faslpr-Foxq1sa-J/J m 37.5 4.2959 46.4091 28.5909
NOD/ShiLtJ f 33.5 4.2959 42.4091 24.5909
NOD/ShiLtJ m 31.5 4.2959 40.4091 22.5909
NZW/LacJ f 34.0 4.2959 42.9091 25.0909
NZW/LacJ m 29.5 4.2959 38.4091 20.5909
SB/LeJ f 37.0 4.2959 45.9091 28.0909
SB/LeJ m 36.0 4.2959 44.9091 27.0909
STOCK a/a Tmem79ma Flgft/J f 16.5 4.2959 25.4091 7.5909
STOCK a/a Tmem79ma Flgft/J m 31.0 4.2959 39.9091 22.0909
WSB/EiJ f 35.5 4.2959 44.4091 26.5909
WSB/EiJ m 41.0 4.2959 49.9091 32.0909


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ both 19.25 3.0376 25.5497 12.9503
C57BL/6J both 30.0 3.0376 36.2997 23.7003
CAST/EiJ both 10.5 3.0376 16.7997 4.2003
DBA/1J both 37.5 3.0376 43.7997 31.2003
MRL/MpJ both 38.25 3.0376 44.5497 31.9503
MRL/MpJ Faslpr-Foxq1sa-J/J both 33.25 3.0376 39.5497 26.9503
NOD/ShiLtJ both 32.5 3.0376 38.7997 26.2003
NZW/LacJ both 31.75 3.0376 38.0497 25.4503
SB/LeJ both 36.5 3.0376 42.7997 30.2003
STOCK a/a Tmem79ma Flgft/J both 23.75 3.0376 30.0497 17.4503
WSB/EiJ both 38.25 3.0376 44.5497 31.9503




  GWAS USING LINEAR MIXED MODELS