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Project measure / variable:   Rice1   Tchhl1

ID, description, units MPD:49246   Tchhl1   TCHHL1, spectral counts, hair proteomics    
Data set, strains Rice1   inbred   11 strains     sex: both     age: 10-19wks
Procedure proteomic profiling
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rice1 - TCHHL1, spectral counts, hair proteomics



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means6.68   None 6.41   None
Median of the strain means7.50   None 6.50   None
SD of the strain means± 3.87 ± 4.48
Coefficient of variation (CV)0.580 0.699
Min–max range of strain means0   –   11.5   None 0   –   14.0   None
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.8182 0.8182 0.1385 0.7134
strain 10 623.9091 62.3909 10.5585 < 0.0001
sex:strain 10 78.1818 7.8182 1.3231 0.2787
Residuals 22 130.0 5.9091


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
C3H/HeJ f 9.0 4.24   2   3.0 0.471 6.0, 12.0 0.6
C3H/HeJ m 11.0 5.66   2   4.0 0.514 7.0, 15.0 1.02
C57BL/6J f 10.5 0.707   2   0.5 0.0673 10.0, 11.0 0.99
C57BL/6J m 10.5 3.54   2   2.5 0.337 8.0, 13.0 0.91
CAST/EiJ f 9.0 4.24   2   3.0 0.471 6.0, 12.0 0.6
CAST/EiJ m 14.0 0.0   2   0.0 0.0 14.0, 14.0 1.69
DBA/1J f 7.5 2.12   2   1.5 0.283 6.0, 9.0 0.21
DBA/1J m 6.5 2.12   2   1.5 0.326 5.0, 8.0 0.02
MRL/MpJ f 8.5 0.707   2   0.5 0.0832 8.0, 9.0 0.47
MRL/MpJ m 8.0 2.83   2   2.0 0.354 6.0, 10.0 0.35
MRL/MpJ Faslpr-Foxq1sa-J/J f 0.0 0.0   2   0.0 0.0 -1.72
MRL/MpJ Faslpr-Foxq1sa-J/J m 0.0 0.0   2   0.0 0.0 -1.43
NOD/ShiLtJ f 7.5 2.12   2   1.5 0.283 6.0, 9.0 0.21
NOD/ShiLtJ m 7.0 1.41   2   1.0 0.202 6.0, 8.0 0.13
NZW/LacJ f 6.0 1.41   2   1.0 0.236 5.0, 7.0 -0.18
NZW/LacJ m 2.0 2.83   2   2.0 1.41 -0.98
SB/LeJ f 0.0 0.0   2   0.0 0.0 -1.72
SB/LeJ m 0.0 0.0   2   0.0 0.0 -1.43
STOCK a/a Tmem79ma Flgft/J f 11.5 0.707   2   0.5 0.0615 11.0, 12.0 1.24
STOCK a/a Tmem79ma Flgft/J m 6.0 2.83   2   2.0 0.471 4.0, 8.0 -0.09
WSB/EiJ f 4.0 1.41   2   1.0 0.354 3.0, 5.0 -0.69
WSB/EiJ m 5.5 2.12   2   1.5 0.386 4.0, 7.0 -0.2


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ f 9.0 1.7189 12.5647 5.4353
C3H/HeJ m 11.0 1.7189 14.5647 7.4353
C57BL/6J f 10.5 1.7189 14.0647 6.9353
C57BL/6J m 10.5 1.7189 14.0647 6.9353
CAST/EiJ f 9.0 1.7189 12.5647 5.4353
CAST/EiJ m 14.0 1.7189 17.5647 10.4353
DBA/1J f 7.5 1.7189 11.0647 3.9353
DBA/1J m 6.5 1.7189 10.0647 2.9353
MRL/MpJ f 8.5 1.7189 12.0647 4.9353
MRL/MpJ m 8.0 1.7189 11.5647 4.4353
MRL/MpJ Faslpr-Foxq1sa-J/J f 0.0 1.7189 3.5647 -3.5647
MRL/MpJ Faslpr-Foxq1sa-J/J m 0.0 1.7189 3.5647 -3.5647
NOD/ShiLtJ f 7.5 1.7189 11.0647 3.9353
NOD/ShiLtJ m 7.0 1.7189 10.5647 3.4353
NZW/LacJ f 6.0 1.7189 9.5647 2.4353
NZW/LacJ m 2.0 1.7189 5.5647 -1.5647
SB/LeJ f 0.0 1.7189 3.5647 -3.5647
SB/LeJ m 0.0 1.7189 3.5647 -3.5647
STOCK a/a Tmem79ma Flgft/J f 11.5 1.7189 15.0647 7.9353
STOCK a/a Tmem79ma Flgft/J m 6.0 1.7189 9.5647 2.4353
WSB/EiJ f 4.0 1.7189 7.5647 0.4353
WSB/EiJ m 5.5 1.7189 9.0647 1.9353


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ both 10.0 1.2154 12.5206 7.4794
C57BL/6J both 10.5 1.2154 13.0206 7.9794
CAST/EiJ both 11.5 1.2154 14.0206 8.9794
DBA/1J both 7.0 1.2154 9.5206 4.4794
MRL/MpJ both 8.25 1.2154 10.7706 5.7294
MRL/MpJ Faslpr-Foxq1sa-J/J both 0.0 1.2154 2.5206 -2.5206
NOD/ShiLtJ both 7.25 1.2154 9.7706 4.7294
NZW/LacJ both 4.0 1.2154 6.5206 1.4794
SB/LeJ both 0.0 1.2154 2.5206 -2.5206
STOCK a/a Tmem79ma Flgft/J both 8.75 1.2154 11.2706 6.2294
WSB/EiJ both 4.75 1.2154 7.2706 2.2294




  GWAS USING LINEAR MIXED MODELS