Project measure / variable:   Rice1   Krtap19_1

ID, description, units MPD:49236   Krtap19_1   KRTAP19-1, spectral counts, hair proteomics    
Data set, strains Rice1   inbred   11 strains     sex: both     age: 10-19wks
Procedure proteomic profiling
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rice1 - KRTAP19-1, spectral counts, hair proteomics



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means8.81   None 9.30   None
Median of the strain means9.50   None 7.00   None
SD of the strain means± 4.82 ± 5.87
Coefficient of variation (CV)0.547 0.632
Min–max range of strain means1.50   –   15.5   None 3.00   –   22.5   None
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2.7166 2.7166 0.1971 0.6614
strain 10 926.873 92.6873 6.7244 0.0001
sex:strain 10 226.9514 22.6951 1.6465 0.1582
Residuals 22 303.2443 13.7838


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
C3H/HeJ f 10.6 2.19   2   1.55 0.208 9.0, 12.1 0.37
C3H/HeJ m 8.4 0.566   2   0.4 0.0673 8.0, 8.8 -0.15
C57BL/6J f 6.2 0.283   2   0.2 0.0456 6.0, 6.4 -0.54
C57BL/6J m 5.21 0.295   2   0.209 0.0566 5.0, 5.42 -0.7
CAST/EiJ f 7.5 0.707   2   0.5 0.0943 7.0, 8.0 -0.27
CAST/EiJ m 7.0 1.41   2   1.0 0.202 6.0, 8.0 -0.39
DBA/1J f 15.5 2.12   2   1.5 0.137 14.0, 17.0 1.39
DBA/1J m 15.5 4.95   2   3.5 0.319 12.0, 19.0 1.06
MRL/MpJ f 15.5 3.54   2   2.5 0.228 13.0, 18.0 1.39
MRL/MpJ m 15.0 1.41   2   1.0 0.0943 14.0, 16.0 0.97
MRL/MpJ Faslpr-Foxq1sa-J/J f 9.5 13.4   2   9.5 1.41 0.14
MRL/MpJ Faslpr-Foxq1sa-J/J m 22.5 0.707   2   0.5 0.0314 22.0, 23.0 2.25
NOD/ShiLtJ f 4.69 0.979   2   0.693 0.209 4.0, 5.38 -0.85
NOD/ShiLtJ m 5.15 1.2   2   0.846 0.232 4.31, 6.0 -0.71
NZW/LacJ f 13.0 4.24   2   3.0 0.326 10.0, 16.0 0.87
NZW/LacJ m 8.0 1.41   2   1.0 0.177 7.0, 9.0 -0.22
SB/LeJ f 10.4 4.32   2   3.06 0.416 7.33, 13.4 0.33
SB/LeJ m 6.54 1.7   2   1.2 0.26 5.33, 7.74 -0.47
STOCK a/a Tmem79ma Flgft/J f 2.5 3.54   2   2.5 1.41 -1.31
STOCK a/a Tmem79ma Flgft/J m 6.0 2.83   2   2.0 0.471 4.0, 8.0 -0.56
WSB/EiJ f 1.5 2.12   2   1.5 1.41 -1.52
WSB/EiJ m 3.0 1.41   2   1.0 0.471 2.0, 4.0 -1.07


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ f 10.55 2.6252 15.9944 5.1056
C3H/HeJ m 8.4 2.6252 13.8444 2.9556
C57BL/6J f 6.2 2.6252 11.6444 0.7556
C57BL/6J m 5.2085 2.6252 10.6529 0.0
CAST/EiJ f 7.5 2.6252 12.9444 2.0556
CAST/EiJ m 7.0 2.6252 12.4444 1.5556
DBA/1J f 15.5 2.6252 20.9444 10.0556
DBA/1J m 15.5 2.6252 20.9444 10.0556
MRL/MpJ f 15.5 2.6252 20.9444 10.0556
MRL/MpJ m 15.0 2.6252 20.4444 9.5556
MRL/MpJ Faslpr-Foxq1sa-J/J f 9.5 2.6252 14.9444 4.0556
MRL/MpJ Faslpr-Foxq1sa-J/J m 22.5 2.6252 27.9444 17.0556
NOD/ShiLtJ f 4.6925 2.6252 10.1369 0.0
NOD/ShiLtJ m 5.154 2.6252 10.5984 0.0
NZW/LacJ f 13.0 2.6252 18.4444 7.5556
NZW/LacJ m 8.0 2.6252 13.4444 2.5556
SB/LeJ f 10.3885 2.6252 15.8329 4.9441
SB/LeJ m 6.535 2.6252 11.9794 1.0906
STOCK a/a Tmem79ma Flgft/J f 2.5 2.6252 7.9444 0.0
STOCK a/a Tmem79ma Flgft/J m 6.0 2.6252 11.4444 0.5556
WSB/EiJ f 1.5 2.6252 6.9444 0.0
WSB/EiJ m 3.0 2.6252 8.4444 0.0


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ both 9.475 1.8563 13.3248 5.6252
C57BL/6J both 5.7043 1.8563 9.554 1.8545
CAST/EiJ both 7.25 1.8563 11.0998 3.4002
DBA/1J both 15.5 1.8563 19.3498 11.6502
MRL/MpJ both 15.25 1.8563 19.0998 11.4002
MRL/MpJ Faslpr-Foxq1sa-J/J both 16.0 1.8563 19.8498 12.1502
NOD/ShiLtJ both 4.9233 1.8563 8.773 1.0735
NZW/LacJ both 10.5 1.8563 14.3498 6.6502
SB/LeJ both 8.4618 1.8563 12.3115 4.612
STOCK a/a Tmem79ma Flgft/J both 4.25 1.8563 8.0998 0.4002
WSB/EiJ both 2.25 1.8563 6.0998 0.0




  GWAS USING LINEAR MIXED MODELS