Project measure / variable:   Rice1   Adh6b

ID, description, units MPD:49203   Adh6b   ADH6B, spectral counts, hair proteomics    
Data set, strains Rice1   inbred   11 strains     sex: both     age: 10-19wks
Procedure proteomic profiling
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rice1 - ADH6B, spectral counts, hair proteomics



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means10.2   None 9.23   None
Median of the strain means9.50   None 9.00   None
SD of the strain means± 6.45 ± 4.84
Coefficient of variation (CV)0.634 0.524
Min–max range of strain means3.00   –   27.5   None 1.00   –   18.5   None
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 10.0227 10.0227 1.1279 0.2997
strain 10 1171.9091 117.1909 13.1877 < 0.0001
sex:strain 10 129.7273 12.9727 1.4598 0.2199
Residuals 22 195.5 8.8864


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
C3H/HeJ f 6.0 8.49   2   6.0 1.41 -0.65
C3H/HeJ m 11.0 2.83   2   2.0 0.257 9.0, 13.0 0.37
C57BL/6J f 7.0 1.41   2   1.0 0.202 6.0, 8.0 -0.49
C57BL/6J m 6.0 1.41   2   1.0 0.236 5.0, 7.0 -0.67
CAST/EiJ f 27.5 4.95   2   3.5 0.18 24.0, 31.0 2.68
CAST/EiJ m 18.5 4.95   2   3.5 0.268 15.0, 22.0 1.92
DBA/1J f 10.0 0.0   2   0.0 0.0 10.0, 10.0 -0.03
DBA/1J m 9.0 2.83   2   2.0 0.314 7.0, 11.0 -0.05
MRL/MpJ f 11.0 1.41   2   1.0 0.129 10.0, 12.0 0.13
MRL/MpJ m 10.0 0.0   2   0.0 0.0 10.0, 10.0 0.16
MRL/MpJ Faslpr-Foxq1sa-J/J f 6.0 1.41   2   1.0 0.236 5.0, 7.0 -0.65
MRL/MpJ Faslpr-Foxq1sa-J/J m 6.0 1.41   2   1.0 0.236 5.0, 7.0 -0.67
NOD/ShiLtJ f 3.0 1.41   2   1.0 0.471 2.0, 4.0 -1.11
NOD/ShiLtJ m 1.0 1.41   2   1.0 1.41 -1.7
NZW/LacJ f 7.5 3.54   2   2.5 0.471 5.0, 10.0 -0.42
NZW/LacJ m 8.0 1.41   2   1.0 0.177 7.0, 9.0 -0.25
SB/LeJ f 9.5 3.54   2   2.5 0.372 7.0, 12.0 -0.11
SB/LeJ m 5.0 0.0   2   0.0 0.0 5.0, 5.0 -0.87
STOCK a/a Tmem79ma Flgft/J f 13.5 3.54   2   2.5 0.262 11.0, 16.0 0.51
STOCK a/a Tmem79ma Flgft/J m 13.5 0.707   2   0.5 0.0524 13.0, 14.0 0.88
WSB/EiJ f 11.0 0.0   2   0.0 0.0 11.0, 11.0 0.13
WSB/EiJ m 13.5 2.12   2   1.5 0.157 12.0, 15.0 0.88


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ f 6.0 2.1079 10.3715 1.6285
C3H/HeJ m 11.0 2.1079 15.3715 6.6285
C57BL/6J f 7.0 2.1079 11.3715 2.6285
C57BL/6J m 6.0 2.1079 10.3715 1.6285
CAST/EiJ f 27.5 2.1079 31.8715 23.1285
CAST/EiJ m 18.5 2.1079 22.8715 14.1285
DBA/1J f 10.0 2.1079 14.3715 5.6285
DBA/1J m 9.0 2.1079 13.3715 4.6285
MRL/MpJ f 11.0 2.1079 15.3715 6.6285
MRL/MpJ m 10.0 2.1079 14.3715 5.6285
MRL/MpJ Faslpr-Foxq1sa-J/J f 6.0 2.1079 10.3715 1.6285
MRL/MpJ Faslpr-Foxq1sa-J/J m 6.0 2.1079 10.3715 1.6285
NOD/ShiLtJ f 3.0 2.1079 7.3715 0.0
NOD/ShiLtJ m 1.0 2.1079 5.3715 0.0
NZW/LacJ f 7.5 2.1079 11.8715 3.1285
NZW/LacJ m 8.0 2.1079 12.3715 3.6285
SB/LeJ f 9.5 2.1079 13.8715 5.1285
SB/LeJ m 5.0 2.1079 9.3715 0.6285
STOCK a/a Tmem79ma Flgft/J f 13.5 2.1079 17.8715 9.1285
STOCK a/a Tmem79ma Flgft/J m 13.5 2.1079 17.8715 9.1285
WSB/EiJ f 11.0 2.1079 15.3715 6.6285
WSB/EiJ m 13.5 2.1079 17.8715 9.1285


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ both 8.5 1.4905 11.5911 5.4089
C57BL/6J both 6.5 1.4905 9.5911 3.4089
CAST/EiJ both 23.0 1.4905 26.0911 19.9089
DBA/1J both 9.5 1.4905 12.5911 6.4089
MRL/MpJ both 10.5 1.4905 13.5911 7.4089
MRL/MpJ Faslpr-Foxq1sa-J/J both 6.0 1.4905 9.0911 2.9089
NOD/ShiLtJ both 2.0 1.4905 5.0911 0.0
NZW/LacJ both 7.75 1.4905 10.8411 4.6589
SB/LeJ both 7.25 1.4905 10.3411 4.1589
STOCK a/a Tmem79ma Flgft/J both 13.5 1.4905 16.5911 10.4089
WSB/EiJ both 12.25 1.4905 15.3411 9.1589




  GWAS USING LINEAR MIXED MODELS