Project measure / variable:   Rice1   2310061N02Rik

ID, description, units MPD:49201   2310061N02Rik   2310061N02Rik protein, spectral counts, hair proteomics    
Data set, strains Rice1   inbred   11 strains     sex: both     age: 10-19wks
Procedure proteomic profiling
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rice1 - 2310061N02Rik protein, spectral counts, hair proteomics



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means8.42   None 8.55   None
Median of the strain means5.69   None 7.60   None
SD of the strain means± 7.37 ± 6.71
Coefficient of variation (CV)0.875 0.785
Min–max range of strain means0   –   24.4   None 0   –   21.8   None
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.1543 0.1543 0.0179 0.8946
strain 10 1928.2201 192.822 22.421 < 0.0001
sex:strain 10 57.5706 5.7571 0.6694 0.7402
Residuals 22 189.2016 8.6001


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
C3H/HeJ f 0.0 0.0   2   0.0 0.0 -1.14
C3H/HeJ m 0.0 0.0   2   0.0 0.0 -1.27
C57BL/6J f 3.14 4.44   2   3.14 1.41 -0.72
C57BL/6J m 2.88 4.07   2   2.88 1.41 -0.85
CAST/EiJ f 0.0 0.0   2   0.0 0.0 -1.14
CAST/EiJ m 0.0 0.0   2   0.0 0.0 -1.27
DBA/1J f 11.8 6.85   2   4.84 0.579 6.98, 16.7 0.46
DBA/1J m 8.84 6.17   2   4.36 0.698 4.48, 13.2 0.04
MRL/MpJ f 9.86 1.5   2   1.06 0.152 8.8, 10.9 0.19
MRL/MpJ m 7.17 0.346   2   0.244 0.0482 6.92, 7.41 -0.21
MRL/MpJ Faslpr-Foxq1sa-J/J f 15.9 2.46   2   1.74 0.155 14.2, 17.7 1.01
MRL/MpJ Faslpr-Foxq1sa-J/J m 15.1 0.39   2   0.276 0.0258 14.8, 15.4 0.98
NOD/ShiLtJ f 12.2 2.73   2   1.93 0.223 10.3, 14.2 0.51
NOD/ShiLtJ m 15.3 0.621   2   0.439 0.0407 14.8, 15.7 1.01
NZW/LacJ f 4.14 0.766   2   0.542 0.185 3.6, 4.68 -0.58
NZW/LacJ m 7.6 0.984   2   0.696 0.13 6.9, 8.29 -0.14
SB/LeJ f 24.4 0.512   2   0.362 0.021 24.0, 24.8 2.17
SB/LeJ m 21.8 6.03   2   4.26 0.277 17.5, 26.0 1.97
STOCK a/a Tmem79ma Flgft/J f 5.54 3.34   2   2.36 0.603 3.18, 7.9 -0.39
STOCK a/a Tmem79ma Flgft/J m 9.07 0.804   2   0.569 0.0886 8.51, 9.64 0.08
WSB/EiJ f 5.69 1.05   2   0.744 0.185 4.94, 6.43 -0.37
WSB/EiJ m 6.34 0.692   2   0.49 0.109 5.85, 6.83 -0.33


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ f 0.0 2.0737 4.3005 -4.3005
C3H/HeJ m 0.0 2.0737 4.3005 -4.3005
C57BL/6J f 3.143 2.0737 7.4435 -1.1575
C57BL/6J m 2.875 2.0737 7.1755 -1.4255
CAST/EiJ f 0.0 2.0737 4.3005 -4.3005
CAST/EiJ m 0.0 2.0737 4.3005 -4.3005
DBA/1J f 11.8245 2.0737 16.125 7.524
DBA/1J m 8.838 2.0737 13.1385 4.5375
MRL/MpJ f 9.859 2.0737 14.1595 5.5585
MRL/MpJ m 7.1675 2.0737 11.468 2.867
MRL/MpJ Faslpr-Foxq1sa-J/J f 15.9245 2.0737 20.225 11.624
MRL/MpJ Faslpr-Foxq1sa-J/J m 15.101 2.0737 19.4015 10.8005
NOD/ShiLtJ f 12.233 2.0737 16.5335 7.9325
NOD/ShiLtJ m 15.264 2.0737 19.5645 10.9635
NZW/LacJ f 4.1415 2.0737 8.442 -0.159
NZW/LacJ m 7.596 2.0737 11.8965 3.2955
SB/LeJ f 24.388 2.0737 28.6885 20.0875
SB/LeJ m 21.7865 2.0737 26.087 17.486
STOCK a/a Tmem79ma Flgft/J f 5.5395 2.0737 9.84 1.239
STOCK a/a Tmem79ma Flgft/J m 9.0745 2.0737 13.375 4.774
WSB/EiJ f 5.685 2.0737 9.9855 1.3845
WSB/EiJ m 6.3385 2.0737 10.639 2.038


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ both 0.0 1.4663 3.0409 -3.0409
C57BL/6J both 3.009 1.4663 6.0499 -0.0319
CAST/EiJ both 0.0 1.4663 3.0409 -3.0409
DBA/1J both 10.3313 1.4663 13.3722 7.2903
MRL/MpJ both 8.5133 1.4663 11.5542 5.4723
MRL/MpJ Faslpr-Foxq1sa-J/J both 15.5128 1.4663 18.5537 12.4718
NOD/ShiLtJ both 13.7485 1.4663 16.7894 10.7076
NZW/LacJ both 5.8688 1.4663 8.9097 2.8278
SB/LeJ both 23.0873 1.4663 26.1282 20.0463
STOCK a/a Tmem79ma Flgft/J both 7.307 1.4663 10.3479 4.2661
WSB/EiJ both 6.0118 1.4663 9.0527 2.9708




  GWAS USING LINEAR MIXED MODELS