Project measure / variable:   Rice1   Sfn

ID, description, units MPD:49245   Sfn   SFN, spectral counts, hair proteomics    
Data set, strains Rice1   inbred   11 strains     sex: both     age: 10-19wks
Procedure proteomic profiling
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rice1 - SFN, spectral counts, hair proteomics



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means9.69   None 9.02   None
Median of the strain means9.42   None 8.58   None
SD of the strain means± 3.85 ± 3.07
Coefficient of variation (CV)0.397 0.341
Min–max range of strain means4.81   –   19.3   None 4.42   –   14.9   None
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 4.6827 4.6827 0.5468 0.4674
strain 10 407.1611 40.7161 4.7546 0.0011
sex:strain 10 80.1878 8.0188 0.9364 0.5205
Residuals 22 188.3987 8.5636


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
C3H/HeJ f 19.3 6.1   2   4.31 0.316 15.0, 23.6 2.5
C3H/HeJ m 14.9 5.59   2   3.95 0.374 11.0, 18.9 1.91
C57BL/6J f 9.42 6.26   2   4.42 0.664 5.0, 13.8 -0.07
C57BL/6J m 4.42 1.53   2   1.08 0.347 3.33, 5.5 -1.5
CAST/EiJ f 4.81 1.15   2   0.812 0.239 4.0, 5.62 -1.27
CAST/EiJ m 6.33 2.59   2   1.83 0.409 4.5, 8.17 -0.88
DBA/1J f 10.4 3.01   2   2.12 0.29 8.25, 12.5 0.18
DBA/1J m 8.58 4.18   2   2.96 0.487 5.62, 11.5 -0.14
MRL/MpJ f 9.13 2.11   2   1.49 0.231 7.64, 10.6 -0.15
MRL/MpJ m 10.1 0.571   2   0.404 0.0566 9.69, 10.5 0.35
MRL/MpJ Faslpr-Foxq1sa-J/J f 12.4 1.96   2   1.38 0.158 11.0, 13.8 0.7
MRL/MpJ Faslpr-Foxq1sa-J/J m 12.3 0.489   2   0.346 0.0396 12.0, 12.7 1.07
NOD/ShiLtJ f 7.19 0.833   2   0.589 0.116 6.6, 7.78 -0.65
NOD/ShiLtJ m 8.5 3.54   2   2.5 0.416 6.0, 11.0 -0.17
NZW/LacJ f 10.3 0.766   2   0.542 0.0744 9.75, 10.8 0.16
NZW/LacJ m 11.2 1.74   2   1.23 0.155 10.0, 12.5 0.71
SB/LeJ f 7.5 0.707   2   0.5 0.0943 7.0, 8.0 -0.57
SB/LeJ m 8.0 1.41   2   1.0 0.177 7.0, 9.0 -0.33
STOCK a/a Tmem79ma Flgft/J f 9.93 2.16   2   1.53 0.218 8.4, 11.5 0.06
STOCK a/a Tmem79ma Flgft/J m 5.4 0.849   2   0.6 0.157 4.8, 6.0 -1.18
WSB/EiJ f 6.2 3.11   2   2.2 0.502 4.0, 8.4 -0.91
WSB/EiJ m 9.51 0.85   2   0.601 0.0894 8.91, 10.1 0.16


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ f 19.3125 2.0692 23.6039 15.0211
C3H/HeJ m 14.95 2.0692 19.2414 10.6586
C57BL/6J f 9.423 2.0692 13.7144 5.1316
C57BL/6J m 4.4165 2.0692 8.7079 0.1251
CAST/EiJ f 4.8125 2.0692 9.1039 0.5211
CAST/EiJ m 6.3335 2.0692 10.6249 2.0421
DBA/1J f 10.375 2.0692 14.6664 6.0836
DBA/1J m 8.5815 2.0692 12.8729 4.2901
MRL/MpJ f 9.1305 2.0692 13.4219 4.8391
MRL/MpJ m 10.096 2.0692 14.3874 5.8046
MRL/MpJ Faslpr-Foxq1sa-J/J f 12.3825 2.0692 16.6739 8.0911
MRL/MpJ Faslpr-Foxq1sa-J/J m 12.346 2.0692 16.6374 8.0546
NOD/ShiLtJ f 7.189 2.0692 11.4804 2.8976
NOD/ShiLtJ m 8.5 2.0692 12.7914 4.2086
NZW/LacJ f 10.2915 2.0692 14.5829 6.0001
NZW/LacJ m 11.2335 2.0692 15.5249 6.9421
SB/LeJ f 7.5 2.0692 11.7914 3.2086
SB/LeJ m 8.0 2.0692 12.2914 3.7086
STOCK a/a Tmem79ma Flgft/J f 9.9275 2.0692 14.2189 5.6361
STOCK a/a Tmem79ma Flgft/J m 5.4 2.0692 9.6914 1.1086
WSB/EiJ f 6.2 2.0692 10.4914 1.9086
WSB/EiJ m 9.51 2.0692 13.8014 5.2186


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ both 17.1313 1.4632 20.1657 14.0968
C57BL/6J both 6.9198 1.4632 9.9542 3.8853
CAST/EiJ both 5.573 1.4632 8.6074 2.5386
DBA/1J both 9.4783 1.4632 12.5127 6.4438
MRL/MpJ both 9.6133 1.4632 12.6477 6.5788
MRL/MpJ Faslpr-Foxq1sa-J/J both 12.3643 1.4632 15.3987 9.3298
NOD/ShiLtJ both 7.8445 1.4632 10.8789 4.8101
NZW/LacJ both 10.7625 1.4632 13.7969 7.7281
SB/LeJ both 7.75 1.4632 10.7844 4.7156
STOCK a/a Tmem79ma Flgft/J both 7.6638 1.4632 10.6982 4.6293
WSB/EiJ both 7.855 1.4632 10.8894 4.8206




  GWAS USING LINEAR MIXED MODELS