Project measure / variable:   Rice1   Krt32

ID, description, units MPD:49222   Krt32   KRT32, spectral counts, hair proteomics    
Data set, strains Rice1   inbred   11 strains     sex: both     age: 10-19wks
Procedure proteomic profiling
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rice1 - KRT32, spectral counts, hair proteomics



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means2.72   None 2.33   None
Median of the strain means2.91   None 2.37   None
SD of the strain means± 1.56 ± 1.52
Coefficient of variation (CV)0.574 0.651
Min–max range of strain means0.543   –   5.80   None 0   –   4.75   None
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1.6669 1.6669 1.2739 0.2712
strain 10 83.3098 8.331 6.3668 0.0002
sex:strain 10 11.2427 1.1243 0.8592 0.5816
Residuals 22 28.7872 1.3085


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
C3H/HeJ f 2.97 0.594   2   0.42 0.2 2.55, 3.39 0.16
C3H/HeJ m 4.21 0.563   2   0.398 0.134 3.81, 4.6 1.24
C57BL/6J f 0.92 1.3   2   0.92 1.41 -1.15
C57BL/6J m 0.0 0.0   2   0.0 0.0 -1.54
CAST/EiJ f 5.8 0.752   2   0.532 0.13 5.27, 6.33 1.98
CAST/EiJ m 3.46 0.136   2   0.096 0.0392 3.36, 3.56 0.75
DBA/1J f 3.89 0.527   2   0.373 0.135 3.52, 4.27 0.75
DBA/1J m 3.21 2.18   2   1.54 0.679 1.67, 4.75 0.58
MRL/MpJ f 2.6 0.141   2   0.1 0.0544 2.5, 2.7 -0.08
MRL/MpJ m 2.37 0.184   2   0.13 0.0776 2.24, 2.5 0.03
MRL/MpJ Faslpr-Foxq1sa-J/J f 3.42 0.825   2   0.583 0.242 2.83, 4.0 0.45
MRL/MpJ Faslpr-Foxq1sa-J/J m 4.75 1.77   2   1.25 0.372 3.5, 6.0 1.6
NOD/ShiLtJ f 2.91 0.221   2   0.157 0.076 2.75, 3.07 0.12
NOD/ShiLtJ m 2.22 1.02   2   0.722 0.46 1.5, 2.94 -0.07
NZW/LacJ f 1.58 2.24   2   1.58 1.41 -0.73
NZW/LacJ m 1.45 2.06   2   1.45 1.41 -0.58
SB/LeJ f 1.29 1.83   2   1.29 1.41 -0.91
SB/LeJ m 0.894 1.26   2   0.894 1.41 -0.95
STOCK a/a Tmem79ma Flgft/J f 0.543 0.769   2   0.543 1.41 -1.39
STOCK a/a Tmem79ma Flgft/J m 0.538 0.762   2   0.538 1.41 -1.18
WSB/EiJ f 3.97 0.631   2   0.446 0.159 3.52, 4.41 0.8
WSB/EiJ m 2.52 0.328   2   0.232 0.13 2.29, 2.75 0.13


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ f 2.971 0.8089 4.6485 1.2935
C3H/HeJ m 4.206 0.8089 5.8835 2.5285
C57BL/6J f 0.92 0.8089 2.5975 -0.7575
C57BL/6J m 0.0 0.8089 1.6775 -1.6775
CAST/EiJ f 5.8015 0.8089 7.479 4.124
CAST/EiJ m 3.46 0.8089 5.1375 1.7825
DBA/1J f 3.8945 0.8089 5.572 2.217
DBA/1J m 3.2085 0.8089 4.886 1.531
MRL/MpJ f 2.6 0.8089 4.2775 0.9225
MRL/MpJ m 2.37 0.8089 4.0475 0.6925
MRL/MpJ Faslpr-Foxq1sa-J/J f 3.4165 0.8089 5.094 1.739
MRL/MpJ Faslpr-Foxq1sa-J/J m 4.75 0.8089 6.4275 3.0725
NOD/ShiLtJ f 2.9105 0.8089 4.588 1.233
NOD/ShiLtJ m 2.222 0.8089 3.8995 0.5445
NZW/LacJ f 1.5825 0.8089 3.26 -0.095
NZW/LacJ m 1.4535 0.8089 3.131 -0.224
SB/LeJ f 1.2945 0.8089 2.972 -0.383
SB/LeJ m 0.894 0.8089 2.5715 -0.7835
STOCK a/a Tmem79ma Flgft/J f 0.5435 0.8089 2.221 -1.134
STOCK a/a Tmem79ma Flgft/J m 0.5385 0.8089 2.216 -1.139
WSB/EiJ f 3.968 0.8089 5.6455 2.2905
WSB/EiJ m 2.518 0.8089 4.1955 0.8405


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ both 3.5885 0.572 4.7747 2.4023
C57BL/6J both 0.46 0.572 1.6462 -0.7262
CAST/EiJ both 4.6308 0.572 5.8169 3.4446
DBA/1J both 3.5515 0.572 4.7377 2.3653
MRL/MpJ both 2.485 0.572 3.6712 1.2988
MRL/MpJ Faslpr-Foxq1sa-J/J both 4.0833 0.572 5.2694 2.8971
NOD/ShiLtJ both 2.5663 0.572 3.7524 1.3801
NZW/LacJ both 1.518 0.572 2.7042 0.3318
SB/LeJ both 1.0943 0.572 2.2804 -0.0919
STOCK a/a Tmem79ma Flgft/J both 0.541 0.572 1.7272 -0.6452
WSB/EiJ both 3.243 0.572 4.4292 2.0568




  GWAS USING LINEAR MIXED MODELS