Project measure / variable:   Rice1   Tubb2a

ID, description, units MPD:49247   Tubb2a   TUBB2A, spectral counts, hair proteomics    
Data set, strains Rice1   inbred   11 strains     sex: both     age: 10-19wks
Procedure proteomic profiling
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rice1 - TUBB2A, spectral counts, hair proteomics



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means8.67   None 8.31   None
Median of the strain means9.32   None 7.00   None
SD of the strain means± 4.53 ± 4.84
Coefficient of variation (CV)0.523 0.583
Min–max range of strain means2.50   –   16.4   None 3.50   –   19.0   None
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1.4288 1.4288 0.1238 0.7283
strain 10 680.8268 68.0827 5.8973 0.0003
sex:strain 10 200.7152 20.0715 1.7386 0.1343
Residuals 22 253.9831 11.5447


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
C3H/HeJ f 11.7 2.37   2   1.68 0.203 10.0, 13.4 0.67
C3H/HeJ m 19.0 6.21   2   4.39 0.327 14.6, 23.4 2.21
C57BL/6J f 14.3 6.09   2   4.31 0.426 10.0, 18.6 1.24
C57BL/6J m 5.0 0.0   2   0.0 0.0 5.0, 5.0 -0.68
CAST/EiJ f 9.32 1.86   2   1.32 0.2 8.0, 10.6 0.14
CAST/EiJ m 8.25 3.18   2   2.25 0.386 6.0, 10.5 -0.01
DBA/1J f 2.5 0.707   2   0.5 0.283 2.0, 3.0 -1.36
DBA/1J m 3.5 0.707   2   0.5 0.202 3.0, 4.0 -0.99
MRL/MpJ f 16.4 5.84   2   4.13 0.355 12.3, 20.6 1.71
MRL/MpJ m 12.4 6.29   2   4.44 0.505 8.0, 16.9 0.85
MRL/MpJ Faslpr-Foxq1sa-J/J f 6.5 2.12   2   1.5 0.326 5.0, 8.0 -0.48
MRL/MpJ Faslpr-Foxq1sa-J/J m 7.0 1.41   2   1.0 0.202 6.0, 8.0 -0.27
NOD/ShiLtJ f 9.4 0.849   2   0.6 0.0903 8.8, 10.0 0.16
NOD/ShiLtJ m 13.9 4.05   2   2.87 0.292 11.0, 16.7 1.16
NZW/LacJ f 10.2 3.14   2   2.22 0.307 8.0, 12.4 0.34
NZW/LacJ m 5.83 1.18   2   0.833 0.202 5.0, 6.67 -0.51
SB/LeJ f 3.5 0.707   2   0.5 0.202 3.0, 4.0 -1.14
SB/LeJ m 5.0 0.0   2   0.0 0.0 5.0, 5.0 -0.68
STOCK a/a Tmem79ma Flgft/J f 8.5 4.95   2   3.5 0.582 5.0, 12.0 -0.04
STOCK a/a Tmem79ma Flgft/J m 7.5 2.12   2   1.5 0.283 6.0, 9.0 -0.17
WSB/EiJ f 3.0 4.24   2   3.0 1.41 -1.25
WSB/EiJ m 4.0 1.41   2   1.0 0.354 3.0, 5.0 -0.89


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ f 11.6785 2.4026 16.6611 6.6959
C3H/HeJ m 19.0075 2.4026 23.9901 14.0249
C57BL/6J f 14.3075 2.4026 19.2901 9.3249
C57BL/6J m 5.0 2.4026 9.9826 0.0174
CAST/EiJ f 9.318 2.4026 14.3006 4.3354
CAST/EiJ m 8.25 2.4026 13.2326 3.2674
DBA/1J f 2.5 2.4026 7.4826 0.0
DBA/1J m 3.5 2.4026 8.4826 0.0
MRL/MpJ f 16.4395 2.4026 21.4221 11.4569
MRL/MpJ m 12.4445 2.4026 17.4271 7.4619
MRL/MpJ Faslpr-Foxq1sa-J/J f 6.5 2.4026 11.4826 1.5174
MRL/MpJ Faslpr-Foxq1sa-J/J m 7.0 2.4026 11.9826 2.0174
NOD/ShiLtJ f 9.4 2.4026 14.3826 4.4174
NOD/ShiLtJ m 13.8655 2.4026 18.8481 8.8829
NZW/LacJ f 10.222 2.4026 15.2046 5.2394
NZW/LacJ m 5.8335 2.4026 10.8161 0.8509
SB/LeJ f 3.5 2.4026 8.4826 0.0
SB/LeJ m 5.0 2.4026 9.9826 0.0174
STOCK a/a Tmem79ma Flgft/J f 8.5 2.4026 13.4826 3.5174
STOCK a/a Tmem79ma Flgft/J m 7.5 2.4026 12.4826 2.5174
WSB/EiJ f 3.0 2.4026 7.9826 0.0
WSB/EiJ m 4.0 2.4026 8.9826 0.0


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ both 15.343 1.6989 18.8662 11.8198
C57BL/6J both 9.6537 1.6989 13.177 6.1305
CAST/EiJ both 8.784 1.6989 12.3072 5.2608
DBA/1J both 3.0 1.6989 6.5232 0.0
MRL/MpJ both 14.442 1.6989 17.9652 10.9188
MRL/MpJ Faslpr-Foxq1sa-J/J both 6.75 1.6989 10.2732 3.2268
NOD/ShiLtJ both 11.6327 1.6989 15.156 8.1095
NZW/LacJ both 8.0277 1.6989 11.551 4.5045
SB/LeJ both 4.25 1.6989 7.7732 0.7268
STOCK a/a Tmem79ma Flgft/J both 8.0 1.6989 11.5232 4.4768
WSB/EiJ both 3.5 1.6989 7.0232 0.0




  GWAS USING LINEAR MIXED MODELS