Project measure / variable:   Rice1   Krtap19_3

ID, description, units MPD:49237   Krtap19_3   KRTAP19-3, spectral counts, hair proteomics    
Data set, strains Rice1   inbred   11 strains     sex: both     age: 10-19wks
Procedure proteomic profiling
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rice1 - KRTAP19-3, spectral counts, hair proteomics



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means10.8   None 12.3   None
Median of the strain means11.0   None 10.0   None
SD of the strain means± 7.53 ± 9.97
Coefficient of variation (CV)0.694 0.808
Min–max range of strain means0   –   22.9   None 0   –   32.3   None
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 24.256 24.256 1.3253 0.262
strain 10 2905.0977 290.5098 15.8723 < 0.0001
sex:strain 10 215.0524 21.5052 1.175 0.3576
Residuals 22 402.6642 18.3029


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
C3H/HeJ f 19.0 4.24   2   3.0 0.223 16.0, 22.0 1.08
C3H/HeJ m 19.4 1.92   2   1.36 0.0991 18.0, 20.7 0.71
C57BL/6J f 16.7 2.91   2   2.06 0.174 14.6, 18.7 0.78
C57BL/6J m 21.7 1.39   2   0.984 0.0641 20.7, 22.7 0.94
CAST/EiJ f 5.5 2.12   2   1.5 0.386 4.0, 7.0 -0.71
CAST/EiJ m 10.0 1.41   2   1.0 0.141 9.0, 11.0 -0.23
DBA/1J f 2.0 2.83   2   2.0 1.41 -1.18
DBA/1J m 1.0 1.41   2   1.0 1.41 -1.14
MRL/MpJ f 4.0 0.0   2   0.0 0.0 4.0, 4.0 -0.91
MRL/MpJ m 2.0 2.83   2   2.0 1.41 -1.04
MRL/MpJ Faslpr-Foxq1sa-J/J f 0.0 0.0   2   0.0 0.0 -1.44
MRL/MpJ Faslpr-Foxq1sa-J/J m 0.0 0.0   2   0.0 0.0 -1.24
NOD/ShiLtJ f 17.7 5.63   2   3.98 0.317 13.8, 21.7 0.91
NOD/ShiLtJ m 14.3 2.38   2   1.69 0.167 12.6, 15.9 0.2
NZW/LacJ f 11.0 2.83   2   2.0 0.257 9.0, 13.0 0.02
NZW/LacJ m 9.0 5.66   2   4.0 0.629 5.0, 13.0 -0.33
SB/LeJ f 22.9 0.17   2   0.12 0.00745 22.8, 23.0 1.6
SB/LeJ m 32.3 9.5   2   6.72 0.294 25.6, 39.0 2.0
STOCK a/a Tmem79ma Flgft/J f 9.39 13.3   2   9.39 1.41 -0.19
STOCK a/a Tmem79ma Flgft/J m 18.0 1.41   2   1.0 0.0786 17.0, 19.0 0.57
WSB/EiJ f 11.1 0.177   2   0.125 0.0159 11.0, 11.2 0.03
WSB/EiJ m 8.02 0.0269   2   0.019 0.00335 8.0, 8.04 -0.43


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ f 19.0 3.0251 25.2738 12.7262
C3H/HeJ m 19.357 3.0251 25.6308 13.0832
C57BL/6J f 16.6645 3.0251 22.9383 10.3907
C57BL/6J m 21.7255 3.0251 27.9993 15.4517
CAST/EiJ f 5.5 3.0251 11.7738 -0.7738
CAST/EiJ m 10.0 3.0251 16.2738 3.7262
DBA/1J f 2.0 3.0251 8.2738 -4.2738
DBA/1J m 1.0 3.0251 7.2738 -5.2738
MRL/MpJ f 4.0 3.0251 10.2738 -2.2738
MRL/MpJ m 2.0 3.0251 8.2738 -4.2738
MRL/MpJ Faslpr-Foxq1sa-J/J f 0.0 3.0251 6.2738 -6.2738
MRL/MpJ Faslpr-Foxq1sa-J/J m 0.0 3.0251 6.2738 -6.2738
NOD/ShiLtJ f 17.7445 3.0251 24.0183 11.4707
NOD/ShiLtJ m 14.2565 3.0251 20.5303 7.9827
NZW/LacJ f 11.0 3.0251 17.2738 4.7262
NZW/LacJ m 9.0 3.0251 15.2738 2.7262
SB/LeJ f 22.8795 3.0251 29.1533 16.6057
SB/LeJ m 32.2815 3.0251 38.5553 26.0077
STOCK a/a Tmem79ma Flgft/J f 9.3915 3.0251 15.6653 3.1177
STOCK a/a Tmem79ma Flgft/J m 18.0 3.0251 24.2738 11.7262
WSB/EiJ f 11.125 3.0251 17.3988 4.8512
WSB/EiJ m 8.019 3.0251 14.2928 1.7452


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ both 19.1785 2.1391 23.6147 14.7423
C57BL/6J both 19.195 2.1391 23.6312 14.7588
CAST/EiJ both 7.75 2.1391 12.1862 3.3138
DBA/1J both 1.5 2.1391 5.9362 -2.9362
MRL/MpJ both 3.0 2.1391 7.4362 -1.4362
MRL/MpJ Faslpr-Foxq1sa-J/J both 0.0 2.1391 4.4362 -4.4362
NOD/ShiLtJ both 16.0005 2.1391 20.4367 11.5643
NZW/LacJ both 10.0 2.1391 14.4362 5.5638
SB/LeJ both 27.5805 2.1391 32.0167 23.1443
STOCK a/a Tmem79ma Flgft/J both 13.6958 2.1391 18.132 9.2595
WSB/EiJ both 9.572 2.1391 14.0082 5.1358




  GWAS USING LINEAR MIXED MODELS