Project measure / variable:   Rice1   Fabp5

ID, description, units MPD:49213   Fabp5   FABP5, spectral counts, hair proteomics    
Data set, strains Rice1   inbred   11 strains     sex: both     age: 10-19wks
Procedure proteomic profiling
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rice1 - FABP5, spectral counts, hair proteomics



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means1.36   None 1.59   None
Median of the strain means0   None 0   None
SD of the strain means± 1.79 ± 2.54
Coefficient of variation (CV)1.31 1.60
Min–max range of strain means0   –   4.50   None 0   –   7.50   None
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.5682 0.5682 0.3731 0.5476
strain 10 172.2273 17.2227 11.3104 < 0.0001
sex:strain 10 20.6818 2.0682 1.3582 0.2623
Residuals 22 33.5 1.5227


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
C3H/HeJ f 0.0 0.0   2   0.0 0.0 -0.76
C3H/HeJ m 0.0 0.0   2   0.0 0.0 -0.63
C57BL/6J f 0.0 0.0   2   0.0 0.0 -0.76
C57BL/6J m 0.0 0.0   2   0.0 0.0 -0.63
CAST/EiJ f 0.0 0.0   2   0.0 0.0 -0.76
CAST/EiJ m 2.0 2.83   2   2.0 1.41 0.16
DBA/1J f 0.0 0.0   2   0.0 0.0 -0.76
DBA/1J m 0.0 0.0   2   0.0 0.0 -0.63
MRL/MpJ f 4.0 1.41   2   1.0 0.354 3.0, 5.0 1.47
MRL/MpJ m 4.0 1.41   2   1.0 0.354 3.0, 5.0 0.95
MRL/MpJ Faslpr-Foxq1sa-J/J f 4.5 2.12   2   1.5 0.471 3.0, 6.0 1.75
MRL/MpJ Faslpr-Foxq1sa-J/J m 7.5 0.707   2   0.5 0.0943 7.0, 8.0 2.33
NOD/ShiLtJ f 1.0 1.41   2   1.0 1.41 -0.2
NOD/ShiLtJ m 0.0 0.0   2   0.0 0.0 -0.63
NZW/LacJ f 3.0 0.0   2   0.0 0.0 3.0, 3.0 0.91
NZW/LacJ m 4.0 1.41   2   1.0 0.354 3.0, 5.0 0.95
SB/LeJ f 0.0 0.0   2   0.0 0.0 -0.76
SB/LeJ m 0.0 0.0   2   0.0 0.0 -0.63
STOCK a/a Tmem79ma Flgft/J f 2.5 3.54   2   2.5 1.41 0.63
STOCK a/a Tmem79ma Flgft/J m 0.0 0.0   2   0.0 0.0 -0.63
WSB/EiJ f 0.0 0.0   2   0.0 0.0 -0.76
WSB/EiJ m 0.0 0.0   2   0.0 0.0 -0.63


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ f 0.0 0.8726 1.8096 -1.8096
C3H/HeJ m 0.0 0.8726 1.8096 -1.8096
C57BL/6J f 0.0 0.8726 1.8096 -1.8096
C57BL/6J m 0.0 0.8726 1.8096 -1.8096
CAST/EiJ f 0.0 0.8726 1.8096 -1.8096
CAST/EiJ m 2.0 0.8726 3.8096 0.1904
DBA/1J f 0.0 0.8726 1.8096 -1.8096
DBA/1J m 0.0 0.8726 1.8096 -1.8096
MRL/MpJ f 4.0 0.8726 5.8096 2.1904
MRL/MpJ m 4.0 0.8726 5.8096 2.1904
MRL/MpJ Faslpr-Foxq1sa-J/J f 4.5 0.8726 6.3096 2.6904
MRL/MpJ Faslpr-Foxq1sa-J/J m 7.5 0.8726 9.3096 5.6904
NOD/ShiLtJ f 1.0 0.8726 2.8096 -0.8096
NOD/ShiLtJ m 0.0 0.8726 1.8096 -1.8096
NZW/LacJ f 3.0 0.8726 4.8096 1.1904
NZW/LacJ m 4.0 0.8726 5.8096 2.1904
SB/LeJ f 0.0 0.8726 1.8096 -1.8096
SB/LeJ m 0.0 0.8726 1.8096 -1.8096
STOCK a/a Tmem79ma Flgft/J f 2.5 0.8726 4.3096 0.6904
STOCK a/a Tmem79ma Flgft/J m 0.0 0.8726 1.8096 -1.8096
WSB/EiJ f 0.0 0.8726 1.8096 -1.8096
WSB/EiJ m 0.0 0.8726 1.8096 -1.8096


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ both 0.0 0.617 1.2796 -1.2796
C57BL/6J both 0.0 0.617 1.2796 -1.2796
CAST/EiJ both 1.0 0.617 2.2796 -0.2796
DBA/1J both 0.0 0.617 1.2796 -1.2796
MRL/MpJ both 4.0 0.617 5.2796 2.7204
MRL/MpJ Faslpr-Foxq1sa-J/J both 6.0 0.617 7.2796 4.7204
NOD/ShiLtJ both 0.5 0.617 1.7796 -0.7796
NZW/LacJ both 3.5 0.617 4.7796 2.2204
SB/LeJ both 0.0 0.617 1.2796 -1.2796
STOCK a/a Tmem79ma Flgft/J both 1.25 0.617 2.5296 -0.0296
WSB/EiJ both 0.0 0.617 1.2796 -1.2796




  GWAS USING LINEAR MIXED MODELS