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Project measure / variable:   Rice1   Gm11568

ID, description, units MPD:49214   Gm11568   Gm11568, spectral counts, hair proteomics    
Data set, strains Rice1   inbred   11 strains     sex: both     age: 10-19wks
Procedure proteomic profiling
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rice1 - Gm11568, spectral counts, hair proteomics



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means8.82   None 10.2   None
Median of the strain means6.04   None 8.83   None
SD of the strain means± 12.5 ± 12.3
Coefficient of variation (CV)1.42 1.20
Min–max range of strain means0   –   39.4   None 0   –   32.9   None
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 22.3469 22.3469 0.422 0.5227
strain 10 5241.9895 524.199 9.8992 < 0.0001
sex:strain 10 925.4908 92.5491 1.7477 0.1321
Residuals 22 1164.9849 52.9539


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
C3H/HeJ f 0.0 0.0   2   0.0 0.0 -0.7
C3H/HeJ m 0.0 0.0   2   0.0 0.0 -0.83
C57BL/6J f 6.04 3.59   2   2.54 0.594 3.5, 8.57 -0.22
C57BL/6J m 8.83 2.36   2   1.67 0.268 7.16, 10.5 -0.11
CAST/EiJ f 0.0 0.0   2   0.0 0.0 -0.7
CAST/EiJ m 0.0 0.0   2   0.0 0.0 -0.83
DBA/1J f 6.34 1.37   2   0.971 0.217 5.37, 7.31 -0.2
DBA/1J m 10.9 11.5   2   8.12 1.06 2.75, 19.0 0.05
MRL/MpJ f 0.0 0.0   2   0.0 0.0 -0.7
MRL/MpJ m 0.0 0.0   2   0.0 0.0 -0.83
MRL/MpJ Faslpr-Foxq1sa-J/J f 0.0 0.0   2   0.0 0.0 -0.7
MRL/MpJ Faslpr-Foxq1sa-J/J m 0.0 0.0   2   0.0 0.0 -0.83
NOD/ShiLtJ f 39.4 7.07   2   5.0 0.179 34.4, 44.4 2.45
NOD/ShiLtJ m 28.9 18.5   2   13.1 0.641 15.8, 42.0 1.51
NZW/LacJ f 10.6 2.32   2   1.64 0.218 8.97, 12.2 0.14
NZW/LacJ m 32.9 5.9   2   4.17 0.18 28.7, 37.0 1.84
SB/LeJ f 11.0 15.6   2   11.0 1.41 0.17
SB/LeJ m 21.7 10.3   2   7.3 0.476 14.4, 29.0 0.93
STOCK a/a Tmem79ma Flgft/J f 0.0 0.0   2   0.0 0.0 -0.7
STOCK a/a Tmem79ma Flgft/J m 0.0 0.0   2   0.0 0.0 -0.83
WSB/EiJ f 23.6 14.0   2   9.89 0.593 13.7, 33.5 1.18
WSB/EiJ m 9.49 5.92   2   4.18 0.623 5.31, 13.7 -0.06


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ f 0.0 5.1456 10.6713 -10.6713
C3H/HeJ m 0.0 5.1456 10.6713 -10.6713
C57BL/6J f 6.0355 5.1456 16.7068 -4.6358
C57BL/6J m 8.829 5.1456 19.5003 -1.8423
CAST/EiJ f 0.0 5.1456 10.6713 -10.6713
CAST/EiJ m 0.0 5.1456 10.6713 -10.6713
DBA/1J f 6.339 5.1456 17.0103 -4.3323
DBA/1J m 10.875 5.1456 21.5463 0.2037
MRL/MpJ f 0.0 5.1456 10.6713 -10.6713
MRL/MpJ m 0.0 5.1456 10.6713 -10.6713
MRL/MpJ Faslpr-Foxq1sa-J/J f 0.0 5.1456 10.6713 -10.6713
MRL/MpJ Faslpr-Foxq1sa-J/J m 0.0 5.1456 10.6713 -10.6713
NOD/ShiLtJ f 39.4 5.1456 50.0713 28.7287
NOD/ShiLtJ m 28.9025 5.1456 39.5738 18.2312
NZW/LacJ f 10.612 5.1456 21.2833 -0.0593
NZW/LacJ m 32.873 5.1456 43.5443 22.2017
SB/LeJ f 11.0 5.1456 21.6713 0.3287
SB/LeJ m 21.7 5.1456 32.3713 11.0287
STOCK a/a Tmem79ma Flgft/J f 0.0 5.1456 10.6713 -10.6713
STOCK a/a Tmem79ma Flgft/J m 0.0 5.1456 10.6713 -10.6713
WSB/EiJ f 23.607 5.1456 34.2783 12.9357
WSB/EiJ m 9.4925 5.1456 20.1638 -1.1788


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ both 0.0 3.6385 7.5457 -7.5457
C57BL/6J both 7.4322 3.6385 14.978 -0.1135
CAST/EiJ both 0.0 3.6385 7.5457 -7.5457
DBA/1J both 8.607 3.6385 16.1527 1.0613
MRL/MpJ both 0.0 3.6385 7.5457 -7.5457
MRL/MpJ Faslpr-Foxq1sa-J/J both 0.0 3.6385 7.5457 -7.5457
NOD/ShiLtJ both 34.1513 3.6385 41.697 26.6055
NZW/LacJ both 21.7425 3.6385 29.2882 14.1968
SB/LeJ both 16.35 3.6385 23.8957 8.8043
STOCK a/a Tmem79ma Flgft/J both 0.0 3.6385 7.5457 -7.5457
WSB/EiJ both 16.5497 3.6385 24.0955 9.004




  GWAS USING LINEAR MIXED MODELS