Project measure / variable:   Rice1   Krtap19_4

ID, description, units MPD:49238   Krtap19_4   KRTAP19-4, spectral counts, hair proteomics    
Data set, strains Rice1   inbred   11 strains     sex: both     age: 10-19wks
Procedure proteomic profiling
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rice1 - KRTAP19-4, spectral counts, hair proteomics



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means5.73   None 6.00   None
Median of the strain means5.00   None 6.50   None
SD of the strain means± 4.73 ± 3.73
Coefficient of variation (CV)0.827 0.622
Min–max range of strain means0   –   13.0   None 0   –   11.5   None
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.8182 0.8182 0.087 0.7708
strain 10 627.6818 62.7682 6.671 0.0001
sex:strain 10 99.6818 9.9682 1.0594 0.4311
Residuals 22 207.0 9.4091


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
C3H/HeJ f 9.5 0.707   2   0.5 0.0744 9.0, 10.0 0.8
C3H/HeJ m 9.5 2.12   2   1.5 0.223 8.0, 11.0 0.94
C57BL/6J f 7.0 4.24   2   3.0 0.606 4.0, 10.0 0.27
C57BL/6J m 7.5 0.707   2   0.5 0.0943 7.0, 8.0 0.4
CAST/EiJ f 0.0 0.0   2   0.0 0.0 -1.21
CAST/EiJ m 1.0 1.41   2   1.0 1.41 -1.34
DBA/1J f 10.5 2.12   2   1.5 0.202 9.0, 12.0 1.01
DBA/1J m 5.5 2.12   2   1.5 0.386 4.0, 7.0 -0.13
MRL/MpJ f 11.0 1.41   2   1.0 0.129 10.0, 12.0 1.11
MRL/MpJ m 9.5 2.12   2   1.5 0.223 8.0, 11.0 0.94
MRL/MpJ Faslpr-Foxq1sa-J/J f 0.0 0.0   2   0.0 0.0 -1.21
MRL/MpJ Faslpr-Foxq1sa-J/J m 8.0 11.3   2   8.0 1.41 0.54
NOD/ShiLtJ f 5.0 1.41   2   1.0 0.283 4.0, 6.0 -0.15
NOD/ShiLtJ m 6.5 0.707   2   0.5 0.109 6.0, 7.0 0.13
NZW/LacJ f 1.5 2.12   2   1.5 1.41 -0.89
NZW/LacJ m 0.0 0.0   2   0.0 0.0 -1.61
SB/LeJ f 13.0 1.41   2   1.0 0.109 12.0, 14.0 1.54
SB/LeJ m 11.5 3.54   2   2.5 0.307 9.0, 14.0 1.47
STOCK a/a Tmem79ma Flgft/J f 1.5 2.12   2   1.5 1.41 -0.89
STOCK a/a Tmem79ma Flgft/J m 2.0 2.83   2   2.0 1.41 -1.07
WSB/EiJ f 4.0 1.41   2   1.0 0.354 3.0, 5.0 -0.36
WSB/EiJ m 5.0 1.41   2   1.0 0.283 4.0, 6.0 -0.27


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ f 9.5 2.169 13.9982 5.0018
C3H/HeJ m 9.5 2.169 13.9982 5.0018
C57BL/6J f 7.0 2.169 11.4982 2.5018
C57BL/6J m 7.5 2.169 11.9982 3.0018
CAST/EiJ f 0.0 2.169 4.4982 -4.4982
CAST/EiJ m 1.0 2.169 5.4982 -3.4982
DBA/1J f 10.5 2.169 14.9982 6.0018
DBA/1J m 5.5 2.169 9.9982 1.0018
MRL/MpJ f 11.0 2.169 15.4982 6.5018
MRL/MpJ m 9.5 2.169 13.9982 5.0018
MRL/MpJ Faslpr-Foxq1sa-J/J f 0.0 2.169 4.4982 -4.4982
MRL/MpJ Faslpr-Foxq1sa-J/J m 8.0 2.169 12.4982 3.5018
NOD/ShiLtJ f 5.0 2.169 9.4982 0.5018
NOD/ShiLtJ m 6.5 2.169 10.9982 2.0018
NZW/LacJ f 1.5 2.169 5.9982 -2.9982
NZW/LacJ m 0.0 2.169 4.4982 -4.4982
SB/LeJ f 13.0 2.169 17.4982 8.5018
SB/LeJ m 11.5 2.169 15.9982 7.0018
STOCK a/a Tmem79ma Flgft/J f 1.5 2.169 5.9982 -2.9982
STOCK a/a Tmem79ma Flgft/J m 2.0 2.169 6.4982 -2.4982
WSB/EiJ f 4.0 2.169 8.4982 -0.4982
WSB/EiJ m 5.0 2.169 9.4982 0.5018


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ both 9.5 1.5337 12.6807 6.3193
C57BL/6J both 7.25 1.5337 10.4307 4.0693
CAST/EiJ both 0.5 1.5337 3.6807 -2.6807
DBA/1J both 8.0 1.5337 11.1807 4.8193
MRL/MpJ both 10.25 1.5337 13.4307 7.0693
MRL/MpJ Faslpr-Foxq1sa-J/J both 4.0 1.5337 7.1807 0.8193
NOD/ShiLtJ both 5.75 1.5337 8.9307 2.5693
NZW/LacJ both 0.75 1.5337 3.9307 -2.4307
SB/LeJ both 12.25 1.5337 15.4307 9.0693
STOCK a/a Tmem79ma Flgft/J both 1.75 1.5337 4.9307 -1.4307
WSB/EiJ both 4.5 1.5337 7.6807 1.3193




  GWAS USING LINEAR MIXED MODELS