Project measure / variable:   Rice1   Fabp4

ID, description, units MPD:49212   Fabp4   FABP4, spectral counts, hair proteomics    
Data set, strains Rice1   inbred   11 strains     sex: both     age: 10-19wks
Procedure proteomic profiling
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rice1 - FABP4, spectral counts, hair proteomics



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means2.77   None 2.82   None
Median of the strain means3.50   None 3.00   None
SD of the strain means± 2.00 ± 2.22
Coefficient of variation (CV)0.723 0.787
Min–max range of strain means0   –   5.50   None 0   –   6.00   None
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0227 0.0227 0.0137 0.9079
strain 10 158.9091 15.8909 9.5781 < 0.0001
sex:strain 10 19.7273 1.9727 1.189 0.3494
Residuals 22 36.5 1.6591


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
C3H/HeJ f 5.0 0.0   2   0.0 0.0 5.0, 5.0 1.11
C3H/HeJ m 5.0 1.41   2   1.0 0.283 4.0, 6.0 0.98
C57BL/6J f 4.0 1.41   2   1.0 0.354 3.0, 5.0 0.61
C57BL/6J m 1.0 1.41   2   1.0 1.41 -0.82
CAST/EiJ f 3.0 0.0   2   0.0 0.0 3.0, 3.0 0.11
CAST/EiJ m 4.5 0.707   2   0.5 0.157 4.0, 5.0 0.76
DBA/1J f 0.0 0.0   2   0.0 0.0 -1.38
DBA/1J m 0.0 0.0   2   0.0 0.0 -1.27
MRL/MpJ f 3.5 0.707   2   0.5 0.202 3.0, 4.0 0.36
MRL/MpJ m 4.5 2.12   2   1.5 0.471 3.0, 6.0 0.76
MRL/MpJ Faslpr-Foxq1sa-J/J f 5.5 0.707   2   0.5 0.129 5.0, 6.0 1.36
MRL/MpJ Faslpr-Foxq1sa-J/J m 4.0 1.41   2   1.0 0.354 3.0, 5.0 0.53
NOD/ShiLtJ f 2.0 2.83   2   2.0 1.41 -0.39
NOD/ShiLtJ m 3.0 0.0   2   0.0 0.0 3.0, 3.0 0.08
NZW/LacJ f 0.0 0.0   2   0.0 0.0 -1.38
NZW/LacJ m 0.0 0.0   2   0.0 0.0 -1.27
SB/LeJ f 0.0 0.0   2   0.0 0.0 -1.38
SB/LeJ m 0.0 0.0   2   0.0 0.0 -1.27
STOCK a/a Tmem79ma Flgft/J f 3.5 2.12   2   1.5 0.606 2.0, 5.0 0.36
STOCK a/a Tmem79ma Flgft/J m 3.0 1.41   2   1.0 0.471 2.0, 4.0 0.08
WSB/EiJ f 4.0 0.0   2   0.0 0.0 4.0, 4.0 0.61
WSB/EiJ m 6.0 2.83   2   2.0 0.471 4.0, 8.0 1.44


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ f 5.0 0.9108 6.8889 3.1111
C3H/HeJ m 5.0 0.9108 6.8889 3.1111
C57BL/6J f 4.0 0.9108 5.8889 2.1111
C57BL/6J m 1.0 0.9108 2.8889 -0.8889
CAST/EiJ f 3.0 0.9108 4.8889 1.1111
CAST/EiJ m 4.5 0.9108 6.3889 2.6111
DBA/1J f 0.0 0.9108 1.8889 -1.8889
DBA/1J m 0.0 0.9108 1.8889 -1.8889
MRL/MpJ f 3.5 0.9108 5.3889 1.6111
MRL/MpJ m 4.5 0.9108 6.3889 2.6111
MRL/MpJ Faslpr-Foxq1sa-J/J f 5.5 0.9108 7.3889 3.6111
MRL/MpJ Faslpr-Foxq1sa-J/J m 4.0 0.9108 5.8889 2.1111
NOD/ShiLtJ f 2.0 0.9108 3.8889 0.1111
NOD/ShiLtJ m 3.0 0.9108 4.8889 1.1111
NZW/LacJ f 0.0 0.9108 1.8889 -1.8889
NZW/LacJ m 0.0 0.9108 1.8889 -1.8889
SB/LeJ f 0.0 0.9108 1.8889 -1.8889
SB/LeJ m 0.0 0.9108 1.8889 -1.8889
STOCK a/a Tmem79ma Flgft/J f 3.5 0.9108 5.3889 1.6111
STOCK a/a Tmem79ma Flgft/J m 3.0 0.9108 4.8889 1.1111
WSB/EiJ f 4.0 0.9108 5.8889 2.1111
WSB/EiJ m 6.0 0.9108 7.8889 4.1111


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ both 5.0 0.644 6.3356 3.6644
C57BL/6J both 2.5 0.644 3.8356 1.1644
CAST/EiJ both 3.75 0.644 5.0856 2.4144
DBA/1J both 0.0 0.644 1.3356 -1.3356
MRL/MpJ both 4.0 0.644 5.3356 2.6644
MRL/MpJ Faslpr-Foxq1sa-J/J both 4.75 0.644 6.0856 3.4144
NOD/ShiLtJ both 2.5 0.644 3.8356 1.1644
NZW/LacJ both 0.0 0.644 1.3356 -1.3356
SB/LeJ both 0.0 0.644 1.3356 -1.3356
STOCK a/a Tmem79ma Flgft/J both 3.25 0.644 4.5856 1.9144
WSB/EiJ both 5.0 0.644 6.3356 3.6644




  GWAS USING LINEAR MIXED MODELS