Project measure / variable:   Rice1   Krt75

ID, description, units MPD:49223   Krt75   KRT75, spectral counts, hair proteomics    
Data set, strains Rice1   inbred   11 strains     sex: both     age: 10-19wks
Procedure proteomic profiling
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rice1 - KRT75, spectral counts, hair proteomics



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means40.5   None 35.4   None
Median of the strain means44.0   None 39.9   None
SD of the strain means± 18.0 ± 15.0
Coefficient of variation (CV)0.446 0.424
Min–max range of strain means6.00   –   61.9   None 7.00   –   55.0   None
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 279.8815 279.8815 8.5325 0.0079
strain 10 10514.0672 1051.4067 32.0535 < 0.0001
sex:strain 10 503.2097 50.321 1.5341 0.193
Residuals 22 721.6361 32.8016


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
C3H/HeJ f 41.1 2.12   2   1.5 0.0515 39.6, 42.6 0.04
C3H/HeJ m 45.3 6.14   2   4.34 0.135 41.0, 49.7 0.66
C57BL/6J f 56.5 3.54   2   2.5 0.0626 54.0, 59.0 0.89
C57BL/6J m 55.0 0.0601   2   0.0425 0.00109 54.9, 55.0 1.31
CAST/EiJ f 54.7 0.253   2   0.179 0.00463 54.5, 54.9 0.79
CAST/EiJ m 39.9 5.74   2   4.06 0.144 35.9, 44.0 0.3
DBA/1J f 37.2 0.235   2   0.166 0.00634 37.0, 37.3 -0.18
DBA/1J m 35.9 4.43   2   3.13 0.124 32.7, 39.0 0.03
MRL/MpJ f 61.9 14.9   2   10.6 0.241 51.3, 72.5 1.19
MRL/MpJ m 44.0 0.0445   2   0.0315 0.00101 44.0, 44.1 0.57
MRL/MpJ Faslpr-Foxq1sa-J/J f 6.0 2.83   2   2.0 0.471 4.0, 8.0 -1.91
MRL/MpJ Faslpr-Foxq1sa-J/J m 7.5 0.707   2   0.5 0.0943 7.0, 8.0 -1.86
NOD/ShiLtJ f 44.2 13.0   2   9.2 0.294 35.0, 53.4 0.21
NOD/ShiLtJ m 40.3 3.82   2   2.7 0.0948 37.6, 43.0 0.33
NZW/LacJ f 39.0 1.41   2   1.0 0.0363 38.0, 40.0 -0.08
NZW/LacJ m 33.5 2.39   2   1.69 0.0713 31.8, 35.2 -0.13
SB/LeJ f 9.0 2.83   2   2.0 0.314 7.0, 11.0 -1.74
SB/LeJ m 7.0 2.83   2   2.0 0.404 5.0, 9.0 -1.89
STOCK a/a Tmem79ma Flgft/J f 51.4 9.28   2   6.56 0.18 44.9, 58.0 0.61
STOCK a/a Tmem79ma Flgft/J m 38.3 1.9   2   1.35 0.0496 37.0, 39.7 0.19
WSB/EiJ f 44.0 5.26   2   3.72 0.12 40.3, 47.7 0.2
WSB/EiJ m 42.7 7.61   2   5.38 0.178 37.3, 48.1 0.49


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ f 41.1375 4.0498 49.5363 32.7387
C3H/HeJ m 45.3405 4.0498 53.7393 36.9417
C57BL/6J f 56.5 4.0498 64.8988 48.1012
C57BL/6J m 54.9575 4.0498 63.3563 46.5587
CAST/EiJ f 54.701 4.0498 63.0998 46.3022
CAST/EiJ m 39.9445 4.0498 48.3433 31.5457
DBA/1J f 37.1665 4.0498 45.5653 28.7677
DBA/1J m 35.8655 4.0498 44.2643 27.4667
MRL/MpJ f 61.8995 4.0498 70.2983 53.5007
MRL/MpJ m 44.0315 4.0498 52.4303 35.6327
MRL/MpJ Faslpr-Foxq1sa-J/J f 6.0 4.0498 14.3988 0.0
MRL/MpJ Faslpr-Foxq1sa-J/J m 7.5 4.0498 15.8988 0.0
NOD/ShiLtJ f 44.1975 4.0498 52.5963 35.7987
NOD/ShiLtJ m 40.2985 4.0498 48.6973 31.8997
NZW/LacJ f 39.0 4.0498 47.3988 30.6012
NZW/LacJ m 33.536 4.0498 41.9348 25.1372
SB/LeJ f 9.0 4.0498 17.3988 0.6012
SB/LeJ m 7.0 4.0498 15.3988 0.0
STOCK a/a Tmem79ma Flgft/J f 51.439 4.0498 59.8378 43.0402
STOCK a/a Tmem79ma Flgft/J m 38.346 4.0498 46.7448 29.9472
WSB/EiJ f 43.9815 4.0498 52.3803 35.5827
WSB/EiJ m 42.7165 4.0498 51.1153 34.3177


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ both 43.239 2.8636 49.1778 37.3002
C57BL/6J both 55.7287 2.8636 61.6676 49.7899
CAST/EiJ both 47.3227 2.8636 53.2616 41.3839
DBA/1J both 36.516 2.8636 42.4548 30.5772
MRL/MpJ both 52.9655 2.8636 58.9043 47.0267
MRL/MpJ Faslpr-Foxq1sa-J/J both 6.75 2.8636 12.6888 0.8112
NOD/ShiLtJ both 42.248 2.8636 48.1868 36.3092
NZW/LacJ both 36.268 2.8636 42.2068 30.3292
SB/LeJ both 8.0 2.8636 13.9388 2.0612
STOCK a/a Tmem79ma Flgft/J both 44.8925 2.8636 50.8313 38.9537
WSB/EiJ both 43.349 2.8636 49.2878 37.4102




  GWAS USING LINEAR MIXED MODELS