Project measure / variable:   Rice1   Krtap16_1

ID, description, units MPD:49235   Krtap16_1   KRTAP16-1, spectral counts, hair proteomics    
Data set, strains Rice1   inbred   11 strains     sex: both     age: 10-19wks
Procedure proteomic profiling
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rice1 - KRTAP16-1, spectral counts, hair proteomics



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means3.44   None 4.03   None
Median of the strain means2.61   None 0   None
SD of the strain means± 4.09 ± 4.88
Coefficient of variation (CV)1.19 1.21
Min–max range of strain means0   –   11.7   None 0   –   12.6   None
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 3.7481 3.7481 0.3888 0.5394
strain 10 784.0914 78.4091 8.1331 < 0.0001
sex:strain 10 28.1469 2.8147 0.292 0.9759
Residuals 22 212.0952 9.6407


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
C3H/HeJ f 4.95 7.0   2   4.95 1.41 0.37
C3H/HeJ m 6.6 9.33   2   6.6 1.41 0.53
C57BL/6J f 8.64 1.92   2   1.36 0.222 7.28, 9.99 1.27
C57BL/6J m 8.57 1.02   2   0.724 0.119 7.84, 9.29 0.93
CAST/EiJ f 0.0 0.0   2   0.0 0.0 -0.84
CAST/EiJ m 0.0 0.0   2   0.0 0.0 -0.82
DBA/1J f 0.0 0.0   2   0.0 0.0 -0.84
DBA/1J m 0.0 0.0   2   0.0 0.0 -0.82
MRL/MpJ f 0.0 0.0   2   0.0 0.0 -0.84
MRL/MpJ m 0.0 0.0   2   0.0 0.0 -0.82
MRL/MpJ Faslpr-Foxq1sa-J/J f 0.0 0.0   2   0.0 0.0 -0.84
MRL/MpJ Faslpr-Foxq1sa-J/J m 0.0 0.0   2   0.0 0.0 -0.82
NOD/ShiLtJ f 6.56 3.29   2   2.33 0.502 4.24, 8.89 0.76
NOD/ShiLtJ m 9.76 0.463   2   0.328 0.0475 9.43, 10.1 1.17
NZW/LacJ f 0.0 0.0   2   0.0 0.0 -0.84
NZW/LacJ m 0.0 0.0   2   0.0 0.0 -0.82
SB/LeJ f 11.7 4.15   2   2.94 0.354 8.8, 14.7 2.02
SB/LeJ m 12.6 2.33   2   1.65 0.185 11.0, 14.3 1.76
STOCK a/a Tmem79ma Flgft/J f 2.61 3.69   2   2.61 1.41 -0.2
STOCK a/a Tmem79ma Flgft/J m 0.0 0.0   2   0.0 0.0 -0.82
WSB/EiJ f 3.38 4.77   2   3.38 1.41 -0.01
WSB/EiJ m 6.75 1.06   2   0.75 0.157 6.0, 7.5 0.56


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ f 4.95 2.1955 9.5032 0.3968
C3H/HeJ m 6.6 2.1955 11.1532 2.0468
C57BL/6J f 8.6355 2.1955 13.1887 4.0823
C57BL/6J m 8.5665 2.1955 13.1197 4.0133
CAST/EiJ f 0.0 2.1955 4.5532 -4.5532
CAST/EiJ m 0.0 2.1955 4.5532 -4.5532
DBA/1J f 0.0 2.1955 4.5532 -4.5532
DBA/1J m 0.0 2.1955 4.5532 -4.5532
MRL/MpJ f 0.0 2.1955 4.5532 -4.5532
MRL/MpJ m 0.0 2.1955 4.5532 -4.5532
MRL/MpJ Faslpr-Foxq1sa-J/J f 0.0 2.1955 4.5532 -4.5532
MRL/MpJ Faslpr-Foxq1sa-J/J m 0.0 2.1955 4.5532 -4.5532
NOD/ShiLtJ f 6.563 2.1955 11.1162 2.0098
NOD/ShiLtJ m 9.7565 2.1955 14.3097 5.2033
NZW/LacJ f 0.0 2.1955 4.5532 -4.5532
NZW/LacJ m 0.0 2.1955 4.5532 -4.5532
SB/LeJ f 11.732 2.1955 16.2852 7.1788
SB/LeJ m 12.612 2.1955 17.1652 8.0588
STOCK a/a Tmem79ma Flgft/J f 2.6085 2.1955 7.1617 -1.9447
STOCK a/a Tmem79ma Flgft/J m 0.0 2.1955 4.5532 -4.5532
WSB/EiJ f 3.375 2.1955 7.9282 -1.1782
WSB/EiJ m 6.75 2.1955 11.3032 2.1968


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ both 5.775 1.5525 8.9946 2.5554
C57BL/6J both 8.601 1.5525 11.8206 5.3814
CAST/EiJ both 0.0 1.5525 3.2196 -3.2196
DBA/1J both 0.0 1.5525 3.2196 -3.2196
MRL/MpJ both 0.0 1.5525 3.2196 -3.2196
MRL/MpJ Faslpr-Foxq1sa-J/J both 0.0 1.5525 3.2196 -3.2196
NOD/ShiLtJ both 8.1598 1.5525 11.3794 4.9401
NZW/LacJ both 0.0 1.5525 3.2196 -3.2196
SB/LeJ both 12.172 1.5525 15.3916 8.9524
STOCK a/a Tmem79ma Flgft/J both 1.3043 1.5525 4.5239 -1.9154
WSB/EiJ both 5.0625 1.5525 8.2821 1.8429




  GWAS USING LINEAR MIXED MODELS