Project measure / variable:   Rice1   Ctsb

ID, description, units MPD:49208   Ctsb   CTSB, spectral counts, hair proteomics    
Data set, strains Rice1   inbred   11 strains     sex: both     age: 10-19wks
Procedure proteomic profiling
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rice1 - CTSB, spectral counts, hair proteomics



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means2.36   None 2.14   None
Median of the strain means1.50   None 0   None
SD of the strain means± 2.82 ± 2.77
Coefficient of variation (CV)1.19 1.30
Min–max range of strain means0   –   7.50   None 0   –   7.50   None
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.5682 0.5682 0.2101 0.6512
strain 10 238.5 23.85 8.8185 < 0.0001
sex:strain 10 73.6818 7.3682 2.7244 0.024
Residuals 22 59.5 2.7045


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
C3H/HeJ f 4.0 1.41   2   1.0 0.354 3.0, 5.0 0.58
C3H/HeJ m 7.5 3.54   2   2.5 0.471 5.0, 10.0 1.94
C57BL/6J f 4.5 2.12   2   1.5 0.471 3.0, 6.0 0.76
C57BL/6J m 5.5 2.12   2   1.5 0.386 4.0, 7.0 1.22
CAST/EiJ f 0.0 0.0   2   0.0 0.0 -0.84
CAST/EiJ m 2.5 0.707   2   0.5 0.283 2.0, 3.0 0.13
DBA/1J f 2.0 2.83   2   2.0 1.41 -0.13
DBA/1J m 0.0 0.0   2   0.0 0.0 -0.77
MRL/MpJ f 0.0 0.0   2   0.0 0.0 -0.84
MRL/MpJ m 0.0 0.0   2   0.0 0.0 -0.77
MRL/MpJ Faslpr-Foxq1sa-J/J f 0.0 0.0   2   0.0 0.0 -0.84
MRL/MpJ Faslpr-Foxq1sa-J/J m 0.0 0.0   2   0.0 0.0 -0.77
NOD/ShiLtJ f 0.0 0.0   2   0.0 0.0 -0.84
NOD/ShiLtJ m 0.0 0.0   2   0.0 0.0 -0.77
NZW/LacJ f 0.0 0.0   2   0.0 0.0 -0.84
NZW/LacJ m 0.0 0.0   2   0.0 0.0 -0.77
SB/LeJ f 6.5 0.707   2   0.5 0.109 6.0, 7.0 1.47
SB/LeJ m 0.0 0.0   2   0.0 0.0 -0.77
STOCK a/a Tmem79ma Flgft/J f 7.5 2.12   2   1.5 0.283 6.0, 9.0 1.82
STOCK a/a Tmem79ma Flgft/J m 5.0 0.0   2   0.0 0.0 5.0, 5.0 1.04
WSB/EiJ f 1.5 2.12   2   1.5 1.41 -0.31
WSB/EiJ m 3.0 4.24   2   3.0 1.41 0.31


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ f 4.0 1.1629 6.4117 1.5883
C3H/HeJ m 7.5 1.1629 9.9117 5.0883
C57BL/6J f 4.5 1.1629 6.9117 2.0883
C57BL/6J m 5.5 1.1629 7.9117 3.0883
CAST/EiJ f 0.0 1.1629 2.4117 -2.4117
CAST/EiJ m 2.5 1.1629 4.9117 0.0883
DBA/1J f 2.0 1.1629 4.4117 -0.4117
DBA/1J m 0.0 1.1629 2.4117 -2.4117
MRL/MpJ f 0.0 1.1629 2.4117 -2.4117
MRL/MpJ m 0.0 1.1629 2.4117 -2.4117
MRL/MpJ Faslpr-Foxq1sa-J/J f 0.0 1.1629 2.4117 -2.4117
MRL/MpJ Faslpr-Foxq1sa-J/J m 0.0 1.1629 2.4117 -2.4117
NOD/ShiLtJ f 0.0 1.1629 2.4117 -2.4117
NOD/ShiLtJ m 0.0 1.1629 2.4117 -2.4117
NZW/LacJ f 0.0 1.1629 2.4117 -2.4117
NZW/LacJ m 0.0 1.1629 2.4117 -2.4117
SB/LeJ f 6.5 1.1629 8.9117 4.0883
SB/LeJ m 0.0 1.1629 2.4117 -2.4117
STOCK a/a Tmem79ma Flgft/J f 7.5 1.1629 9.9117 5.0883
STOCK a/a Tmem79ma Flgft/J m 5.0 1.1629 7.4117 2.5883
WSB/EiJ f 1.5 1.1629 3.9117 -0.9117
WSB/EiJ m 3.0 1.1629 5.4117 0.5883


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ both 5.75 0.8223 7.4553 4.0447
C57BL/6J both 5.0 0.8223 6.7053 3.2947
CAST/EiJ both 1.25 0.8223 2.9553 -0.4553
DBA/1J both 1.0 0.8223 2.7053 -0.7053
MRL/MpJ both 0.0 0.8223 1.7053 -1.7053
MRL/MpJ Faslpr-Foxq1sa-J/J both 0.0 0.8223 1.7053 -1.7053
NOD/ShiLtJ both 0.0 0.8223 1.7053 -1.7053
NZW/LacJ both 0.0 0.8223 1.7053 -1.7053
SB/LeJ both 3.25 0.8223 4.9553 1.5447
STOCK a/a Tmem79ma Flgft/J both 6.25 0.8223 7.9553 4.5447
WSB/EiJ both 2.25 0.8223 3.9553 0.5447




  GWAS USING LINEAR MIXED MODELS