Project measure / variable:   Rice1   Actg1

ID, description, units MPD:49202   Actg1   ACGT1, spectral counts, hair proteomics    
Data set, strains Rice1   inbred   11 strains     sex: both     age: 10-19wks
Procedure proteomic profiling
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rice1 - ACGT1, spectral counts, hair proteomics



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means12.3   None 10.5   None
Median of the strain means14.0   None 11.5   None
SD of the strain means± 4.00 ± 3.68
Coefficient of variation (CV)0.325 0.349
Min–max range of strain means4.50   –   17.0   None 2.50   –   15.5   None
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 34.6729 34.6729 7.0761 0.0143
strain 10 522.8 52.28 10.6694 < 0.0001
sex:strain 10 68.2827 6.8283 1.3935 0.2468
Residuals 22 107.7996 4.9


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
C3H/HeJ f 10.0 0.0   2   0.0 0.0 10.0, 10.0 -0.58
C3H/HeJ m 11.5 3.54   2   2.5 0.307 9.0, 14.0 0.26
C57BL/6J f 14.0 2.83   2   2.0 0.202 12.0, 16.0 0.42
C57BL/6J m 12.5 3.54   2   2.5 0.283 10.0, 15.0 0.53
CAST/EiJ f 17.0 0.0   2   0.0 0.0 17.0, 17.0 1.17
CAST/EiJ m 13.0 1.41   2   1.0 0.109 12.0, 14.0 0.67
DBA/1J f 7.5 2.12   2   1.5 0.283 6.0, 9.0 -1.2
DBA/1J m 7.5 0.707   2   0.5 0.0943 7.0, 8.0 -0.83
MRL/MpJ f 12.5 0.707   2   0.5 0.0566 12.0, 13.0 0.05
MRL/MpJ m 15.5 2.12   2   1.5 0.137 14.0, 17.0 1.35
MRL/MpJ Faslpr-Foxq1sa-J/J f 9.0 0.0   2   0.0 0.0 9.0, 9.0 -0.83
MRL/MpJ Faslpr-Foxq1sa-J/J m 7.5 0.707   2   0.5 0.0943 7.0, 8.0 -0.83
NOD/ShiLtJ f 15.1 3.19   2   2.26 0.211 12.9, 17.4 0.7
NOD/ShiLtJ m 9.0 1.41   2   1.0 0.157 8.0, 10.0 -0.42
NZW/LacJ f 15.5 0.707   2   0.5 0.0456 15.0, 16.0 0.8
NZW/LacJ m 12.0 2.83   2   2.0 0.236 10.0, 14.0 0.4
SB/LeJ f 4.5 0.707   2   0.5 0.157 4.0, 5.0 -1.95
SB/LeJ m 2.5 0.707   2   0.5 0.283 2.0, 3.0 -2.19
STOCK a/a Tmem79ma Flgft/J f 14.9 6.01   2   4.25 0.403 10.7, 19.2 0.65
STOCK a/a Tmem79ma Flgft/J m 11.0 1.41   2   1.0 0.129 10.0, 12.0 0.12
WSB/EiJ f 15.5 0.707   2   0.5 0.0456 15.0, 16.0 0.8
WSB/EiJ m 14.0 1.41   2   1.0 0.101 13.0, 15.0 0.94


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ f 10.0 1.5652 13.2461 6.7539
C3H/HeJ m 11.5 1.5652 14.7461 8.2539
C57BL/6J f 14.0 1.5652 17.2461 10.7539
C57BL/6J m 12.5 1.5652 15.7461 9.2539
CAST/EiJ f 17.0 1.5652 20.2461 13.7539
CAST/EiJ m 13.0 1.5652 16.2461 9.7539
DBA/1J f 7.5 1.5652 10.7461 4.2539
DBA/1J m 7.5 1.5652 10.7461 4.2539
MRL/MpJ f 12.5 1.5652 15.7461 9.2539
MRL/MpJ m 15.5 1.5652 18.7461 12.2539
MRL/MpJ Faslpr-Foxq1sa-J/J f 9.0 1.5652 12.2461 5.7539
MRL/MpJ Faslpr-Foxq1sa-J/J m 7.5 1.5652 10.7461 4.2539
NOD/ShiLtJ f 15.1125 1.5652 18.3586 11.8664
NOD/ShiLtJ m 9.0 1.5652 12.2461 5.7539
NZW/LacJ f 15.5 1.5652 18.7461 12.2539
NZW/LacJ m 12.0 1.5652 15.2461 8.7539
SB/LeJ f 4.5 1.5652 7.7461 1.2539
SB/LeJ m 2.5 1.5652 5.7461 0.0
STOCK a/a Tmem79ma Flgft/J f 14.917 1.5652 18.1631 11.6709
STOCK a/a Tmem79ma Flgft/J m 11.0 1.5652 14.2461 7.7539
WSB/EiJ f 15.5 1.5652 18.7461 12.2539
WSB/EiJ m 14.0 1.5652 17.2461 10.7539


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ both 10.75 1.1068 13.0454 8.4546
C57BL/6J both 13.25 1.1068 15.5454 10.9546
CAST/EiJ both 15.0 1.1068 17.2954 12.7046
DBA/1J both 7.5 1.1068 9.7954 5.2046
MRL/MpJ both 14.0 1.1068 16.2954 11.7046
MRL/MpJ Faslpr-Foxq1sa-J/J both 8.25 1.1068 10.5454 5.9546
NOD/ShiLtJ both 12.0562 1.1068 14.3516 9.7609
NZW/LacJ both 13.75 1.1068 16.0454 11.4546
SB/LeJ both 3.5 1.1068 5.7954 1.2046
STOCK a/a Tmem79ma Flgft/J both 12.9585 1.1068 15.2539 10.6631
WSB/EiJ both 14.75 1.1068 17.0454 12.4546




  GWAS USING LINEAR MIXED MODELS