Project measure / variable:   Rice1   Capn12

ID, description, units MPD:49205   Capn12   CAPN12, spectral counts, hair proteomics    
Data set, strains Rice1   inbred   11 strains     sex: both     age: 10-19wks
Procedure proteomic profiling
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rice1 - CAPN12, spectral counts, hair proteomics



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means4.41   None 4.77   None
Median of the strain means5.50   None 4.50   None
SD of the strain means± 2.99 ± 3.59
Coefficient of variation (CV)0.678 0.752
Min–max range of strain means0   –   8.00   None 1.00   –   11.0   None
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1.4545 1.4545 0.2645 0.6122
strain 10 365.6364 36.5636 6.6479 0.0001
sex:strain 10 70.5455 7.0545 1.2826 0.2986
Residuals 22 121.0 5.5


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
C3H/HeJ f 0.0 0.0   2   0.0 0.0 -1.47
C3H/HeJ m 1.0 1.41   2   1.0 1.41 -1.05
C57BL/6J f 7.0 4.24   2   3.0 0.606 4.0, 10.0 0.87
C57BL/6J m 7.5 0.707   2   0.5 0.0943 7.0, 8.0 0.76
CAST/EiJ f 8.0 4.24   2   3.0 0.53 5.0, 11.0 1.2
CAST/EiJ m 11.0 2.83   2   2.0 0.257 9.0, 13.0 1.74
DBA/1J f 5.5 3.54   2   2.5 0.643 3.0, 8.0 0.36
DBA/1J m 1.5 2.12   2   1.5 1.41 -0.91
MRL/MpJ f 6.5 0.707   2   0.5 0.109 6.0, 7.0 0.7
MRL/MpJ m 4.5 0.707   2   0.5 0.157 4.0, 5.0 -0.08
MRL/MpJ Faslpr-Foxq1sa-J/J f 5.5 2.12   2   1.5 0.386 4.0, 7.0 0.36
MRL/MpJ Faslpr-Foxq1sa-J/J m 7.0 0.0   2   0.0 0.0 7.0, 7.0 0.62
NOD/ShiLtJ f 4.5 2.12   2   1.5 0.471 3.0, 6.0 0.03
NOD/ShiLtJ m 8.5 0.707   2   0.5 0.0832 8.0, 9.0 1.04
NZW/LacJ f 5.0 0.0   2   0.0 0.0 5.0, 5.0 0.2
NZW/LacJ m 1.0 1.41   2   1.0 1.41 -1.05
SB/LeJ f 6.5 3.54   2   2.5 0.544 4.0, 9.0 0.7
SB/LeJ m 7.0 4.24   2   3.0 0.606 4.0, 10.0 0.62
STOCK a/a Tmem79ma Flgft/J f 0.0 0.0   2   0.0 0.0 -1.47
STOCK a/a Tmem79ma Flgft/J m 1.0 1.41   2   1.0 1.41 -1.05
WSB/EiJ f 0.0 0.0   2   0.0 0.0 -1.47
WSB/EiJ m 2.5 3.54   2   2.5 1.41 -0.63


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ f 0.0 1.6583 3.4391 -3.4391
C3H/HeJ m 1.0 1.6583 4.4391 -2.4391
C57BL/6J f 7.0 1.6583 10.4391 3.5609
C57BL/6J m 7.5 1.6583 10.9391 4.0609
CAST/EiJ f 8.0 1.6583 11.4391 4.5609
CAST/EiJ m 11.0 1.6583 14.4391 7.5609
DBA/1J f 5.5 1.6583 8.9391 2.0609
DBA/1J m 1.5 1.6583 4.9391 -1.9391
MRL/MpJ f 6.5 1.6583 9.9391 3.0609
MRL/MpJ m 4.5 1.6583 7.9391 1.0609
MRL/MpJ Faslpr-Foxq1sa-J/J f 5.5 1.6583 8.9391 2.0609
MRL/MpJ Faslpr-Foxq1sa-J/J m 7.0 1.6583 10.4391 3.5609
NOD/ShiLtJ f 4.5 1.6583 7.9391 1.0609
NOD/ShiLtJ m 8.5 1.6583 11.9391 5.0609
NZW/LacJ f 5.0 1.6583 8.4391 1.5609
NZW/LacJ m 1.0 1.6583 4.4391 -2.4391
SB/LeJ f 6.5 1.6583 9.9391 3.0609
SB/LeJ m 7.0 1.6583 10.4391 3.5609
STOCK a/a Tmem79ma Flgft/J f 0.0 1.6583 3.4391 -3.4391
STOCK a/a Tmem79ma Flgft/J m 1.0 1.6583 4.4391 -2.4391
WSB/EiJ f 0.0 1.6583 3.4391 -3.4391
WSB/EiJ m 2.5 1.6583 5.9391 -0.9391


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ both 0.5 1.1726 2.9318 -1.9318
C57BL/6J both 7.25 1.1726 9.6818 4.8182
CAST/EiJ both 9.5 1.1726 11.9318 7.0682
DBA/1J both 3.5 1.1726 5.9318 1.0682
MRL/MpJ both 5.5 1.1726 7.9318 3.0682
MRL/MpJ Faslpr-Foxq1sa-J/J both 6.25 1.1726 8.6818 3.8182
NOD/ShiLtJ both 6.5 1.1726 8.9318 4.0682
NZW/LacJ both 3.0 1.1726 5.4318 0.5682
SB/LeJ both 6.75 1.1726 9.1818 4.3182
STOCK a/a Tmem79ma Flgft/J both 0.5 1.1726 2.9318 -1.9318
WSB/EiJ both 1.25 1.1726 3.6818 -1.1818




  GWAS USING LINEAR MIXED MODELS